Skip to another splice site:
1  
 5'  3'   
2  
 5'  3'   
3  
 5'  3'   
4  
 5'  3'   
5  
 5'  3'   
6  
 5'  3'   
7  
 5'  3'   
8  
 5'  3'   
9  
 5'  3'   
10  
 5'  3'   
11  
 5'  3'   
12  
 5'  3'   
13  
 5'  3'   
14  
 5'  3'   
15  
 5'  3'   
16  
 5'  3'   
17  
 5'  3'   
18  
 5'  3'   
19  
 5'  3'   
20  
 5'  3'   
21  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...caaaatgtacagactacagacaaagtagttccatgcttgcttgcatatgtcatatttgagacctcctttgcttccacctgatggaacaaatggtgtgcagTGAAACCGGATCGCTTTATTCAAGGAAACTTGCCAGCTTTATAGAAAAGCGGCTAGCGTCTGAGAGAACTGCATCT

Basic information

species Oryza sativa
transcript LOC_Os03g18310.2
intron # 15
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29643803|gb|CB648810.1|CB648810
EST:     GAAAGTTTAGATAATGTCAGAGGACGGATTGGTGGAGATTCATCTTTGAG                         TGAAACCGGATCGCTTTATTCAAGGAAACTTGCCAGCTTTATAGAAAAGCG
genomic: GAAAGTTTAGATAATGTCAGAGGACGGATTGGTGGAGATTCATCTTTGAGgtctttaatt ... tggtgtgcagTGAAACCGGATCGCTTTATTCAAGGAAACTTGCCAGCTTTATAGAAAAGCG
EST: gi|88431147|gb|CI574318.1|CI574318
EST:     GAAAGTTTAGATAATGTCAGAGGAGGGATTGGTGGAGATTCATCTTTGAG                         TGAAACCGGATCGCTTTATTCAAGGAAACTTGCCAGCTTTATAGAACAGCG
genomic: GAAAGTTTAGATAATGTCAGAGGACGGATTGGTGGAGATTCATCTTTGAGgtctttaatt ... tggtgtgcagTGAAACCGGATCGCTTTATTCAAGGAAACTTGCCAGCTTTATAGAAAAGCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatgtcatatttgagacctcctttgcttccacctgatggaacaaatggtgtgcagTGAAACCGGATCGCTTTATTCAAGGAAACTTGCCAGCTTTATAGAAAAGCGGCTAGCGTCTGAGAGAACTGCATCT
                              acctgat  putative branch site (score: 4)
 atatttga  TA-rich tract