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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaccttgatttgtttaatgcttcaagatacgacttaatttgagtaaaaaaaaaggggatatcctctttatttcatatttggaaaagaaaaaaaatattaacatcatgatgagccaaatggctctaggaagatgatacaaacttgaggtacaattgttcattaactttgattttttttttatcagGGAAAGTCTAGTTCCACTGAAACACCTGAAGGCTAAACTCCTGTCGAATCAGGACATGATTGTTGCTAAGGATTGGATTACCTGATCACCAGAAAAATGC

Basic information

species Oryza sativa
transcript LOC_Os03g17540.3
intron # 15
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33800838|gb|CF326291.1|CF326291
EST:     GGAGATTGGGCTTGCTTTCTAGGGGCCTTGGTTGGCTAGAGAAAAGCAAG                         GGAAAGTCTAGTTCCACTGAAACACCTGAAGGCTAAACTCCTGTCGAATCA
genomic: GGAGATTGGGCTTGCTTTCTAGGGGCCTTGGTTGGCTAGAGAAAAGCAAGgtaccttgat ... tttttatcagGGAAAGTCTAGTTCCACTGAAACACCTGAAGGCTAAACTCCTGTCGAATCA
EST: gi|88845563|gb|CI084488.1|CI084488
EST:     GGAGATTGGGCTTGCTTTCTAGGGGCCTTGGTTGGCTAGAGAAAAGCAAG                         GGAAAGTCTAGTTCCACTGAAACACCTGAAGGCTAAACTCCTGTCGAATCA
genomic: GGAGATTGGGCTTGCTTTCTAGGGGCCTTGGTTGGCTAGAGAAAAGCAAGgtaccttgat ... tttttatcagGGAAAGTCTAGTTCCACTGAAACACCTGAAGGCTAAACTCCTGTCGAATCA
EST: gi|94362447|gb|CI052442.1|CI052442
EST:     GGAGATTGGGCTTGCTTTCTAGGGGCCTTGGTTGGCTAGAGAAAAGCAAG                         GGAAAGTCTAGTTCCACTGAAACACCTGAAGGCTAAACTCCTGTCGAATCA
genomic: GGAGATTGGGCTTGCTTTCTAGGGGCCTTGGTTGGCTAGAGAAAAGCAAGgtaccttgat ... tttttatcagGGAAAGTCTAGTTCCACTGAAACACCTGAAGGCTAAACTCCTGTCGAATCA
EST: gi|86477251|gb|CI119884.1|CI119884
EST:     GAGATTGGGCTTGCTTTCTAGGGGCCTTGGTTGGCTAGAGAAAAGCCAAG                         GGAAAGTCTAGTTCCACTGAAACACCTGAAGGCTAAACTCCTGTCGAATC
genomic: GAGATTGGGCTTGCTTTCTAGGGGCCTTGGTTGGCTAGAGAAAAG-CAAGgtaccttgat ... tttttatcagGGAAAGTCTAGTTCCACTGAAACACCTGAAGGCTAAACTCCTGTCGAATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatgatacaaacttgaggtacaattgttcattaactttgattttttttttatcagGGAAAGTCTAGTTCCACTGAAACACCTGAAGGCTAAACTCCTGTCGAATCAGGACATGATTGTTGCTAAGGATTGGATTACCTGATCACCAGAAAAATGC
                                  ctttgatttttttttt  CT-rich tract
                  tacaattgttcattaa  TA-rich tract