1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
gtaagcagcaaacaattaagtacaattaaatatgttcttggaggcacagctgtcaactcacactgaagattttttttcatatatgtatgttgattcttgtagGTGACTGTTTATGTTGATGCCACTGATGCTGAGGAATTTTCAGAAGTTTGTTCAAAGCCACTTAGAAGTTTGCCTTATGATTCACCTGGGCAAATTTTTG
species | Oryza sativa |
transcript | LOC_Os03g12590.1 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: TGTTGCAGTACAACTGTACAAACACTATACCCGAACAACTGCTAGAAAAT GTGACTGTTTATGTTGATGCCACTGATGCTGAGGAATTTTCAGAAGTTTGTEST: gi|58663414|gb|CK052100.1|CK052100
genomic: TGTTGCAGTACAACTGTACAAACACTATACCCGAACAACTGCTAGAAAATgtaagcagca ... attcttgtagGTGACTGTTTATGTTGATGCCACTGATGCTGAGGAATTTTCAGAAGTTTGT
EST: TGTTGCAGTACAACTGTACAAACACTATACCCGAACAACTGCTAGAAAAT GTGACTGTTTAGTGTTGATGCCACTGATGCTGAGGAATTTTCAGAAGTTTGEST: gi|14571493|gb|BI118861.1|BI118861
genomic: TGTTGCAGTACAACTGTACAAACACTATACCCGAACAACTGCTAGAAAATgtaagcagca ... attcttgtagGTGACTGTTTA-TGTTGATGCCACTGATGCTGAGGAATTTTCAGAAGTTTG
EST: ACAAACACTATACCCGAACAACTGCTAGAAAAT GTGACTGTTTATGTTGATGCCACTGATGCTGAGGAATTTTCAGAAGTTTGTEST: gi|58654518|gb|CK043198.1|CK043198
genomic: ACAAACACTATACCCGAACAACTGCTAGAAAATgtaagcagca ... attcttgtagGTGACTGTTTATGTTGATGCCACTGATGCTGAGGAATTTTCAGAAGTTTGT
EST: TGTTGCAGTACAACTGTACAAACACTATACCCGAACAACTGCTAGAAAAT GTGACTGTTTATGTTGATGCCACTGATGCTGAGGAATTTTCAGAAGTTTGTEST: gi|58667540|gb|CK056226.1|CK056226
genomic: TGTTGCAGTACAACTGTACAAACACTATACCCGAACAACTGCTAGAAAATgtaagcagca ... attcttgtagGTGACTGTTTATGTTGATGCCACTGATGCTGAGGAATTTTCAGAAGTTTGT
EST: TGTTGCAGTACAACTGTACAAACACTATACCCGAACAACTGCTAGAAAAT GTGACTGTTTATGTTGATGCCACTGATGCTGAGGAATTTTCAGAAGTTTGT
genomic: TGTTGCAGTACAACTGTACAAACACTATACCCGAACAACTGCTAGAAAATgtaagcagca ... attcttgtagGTGACTGTTTATGTTGATGCCACTGATGCTGAGGAATTTTCAGAAGTTTGT
agctgtcaactcacactgaagattttttttcatatatgtatgttgattcttgtagGTGACTGTTTATGTTGATGCCACTGATGCTGAGGAATTTTCAGAAGTTTGTTCAAAGCCACTTAGAAGTTTGCCTTATGATTCACCTGGGCAAATTTTTG
ttcttgt CT-rich tract
attttttttcatatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcagcaaacaattaagtacaattaaatatgttcttggaggcacagctgtcaactcacactgaagattttttttcatatatgtatgttgattcttgtagGTGACTGTTTATGTTGATGCCACTGATGCTGAGGAATTTTCAGAAGTTTGTTCAAAGCCACTTAGAAGTTTGCCTTATGATTCACCTGGGCAAATTTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT