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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgagagcgttttgatagatgtcttaagcatattaaaggctgcatatggcctttcccagtttcatgagaaattgagaactatcctcttgcccaatgattcatctgctcgtagaatcttaaatttgtcagtcctgattagagcctttccaatcccagGTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCACACATTATTCTTCTCGATGAGCCTTCTAACCATCTT

Basic information

species Oryza sativa
transcript LOC_Os02g58020.1
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g58020.2 (Oryza sativa), 3'ss of exon 15
lower sequence: GRMZM2G013890_T01 (Zea mays), 3'ss of exon 15
gtaatgagagcgttttgatagatgtcttaagcatattaaaggctgcatatggcctttcccagtttcatgagaaattgagaactatcctcttgcccaa-tgattcatctgct---cgtagaatcttaaatttgtcagtcctgatt-agagcctttccaatcccagGTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCACACATTATTCTTCTCGATGAGCCTTCTAACCATCTT
                                                                     |||||| |  | | ||| |          | |||  | ||     |  |||||     |||| |   |||| |   | |||  || | || |||||||||||||| ||||||||||| || || || || |||||||||||||| ||||| ||||| || || ||||||||||||||||||
-------------------------------------------------------------------gtagaaatcgt-agcgatcgtgcaaaggggctcatttctgtgtagaacacagaattgctgatttctggatcctaacccaaagcaattgcgattccagGTGGTCAGAAGAGTAGGGTTGCATTCGCGAAAATAACCTTCAAGAAGCCGCACATCATTCTCCTTGACGAGCCTTCTAACCATCTT

upper sequence: LOC_Os02g58020.2 (Oryza sativa), 3'ss of exon 15
lower sequence: GLYMA13G10530.1 (Glycine max), 3'ss of exon 14
gtaatgagagcgttttgatagatgtcttaagcatattaaaggctgcatatggcctttcc---cagtttcatgagaaattgaga-actatcctcttgcccaatgattcatctgctcgtaga---atcttaaatttgtcagtcctgattagagcctttccaa-----tcccagGTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCACACATTATTCTTCTCGATGAGCCTTCTAACCATCTT
        |  || || ||||   || |||       | |    |   |||  ||||     |||    |    |  ||| || |||       ||    | | | ||  ||    ||||   | |||    || | | |  |  ||  |    |   ||     | | ||||||||||||||| |||||||||||||||||||| || || |||||||||||||| ||  | || |||||||| || || ||||| 
------gtattgtcttcatagtcatcataattcataaacaattcgttaatgttcttttggaacagaaataatgtatgttgggacacttggtgggtgttgtaagttgcaa-tggatatagatgtacctttctgttatgaattgtatttttacttctctaaacgctttactagGTGGTCAGAAAAGCAGGGTTGCCTTTGCAAAGATAACTTTTAAGAAGCCACACATAATATTGCTTGATGAGCCATCCAATCATCTG

upper sequence: LOC_Os02g58020.2 (Oryza sativa), 3'ss of exon 15
lower sequence: GLYMA20G16170.1 (Glycine max), 3'ss of exon 14
gtaatgagagcgttttgatagatgtcttaagcatattaaaggctgcatatggcctttcccagtttcatgagaaattgaga-actatcctcttgcccaat-------gattcatctgctcgtagaatcttaaatttgtcagtcctgattagagcctttccaatcccagGTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCACACATTATTCTTCTCGATGAGCCTTCTAACCATCTT
        |  || || | ||    | |||       | |    |   |||   |||   |    |   |  ||||| || |||       ||   | |       |||  || |    ||      ||| |||| |    | |   || |  |||| |      ||||||||||||||| |||||||||||||||||||| || ||||||||||||||||| ||  | || ||||| || || || ||||| 
------gtattgtcttcaaagtcaccataattcataaacaattcgttaatgatttttaagaacagcgataataattgggacactcggtgggtgttgagttgcaatggatatatatttctgttatgaattatattttttta-cttctctaaattctttac-----tagGTGGTCAGAAAAGCAGGGTTGCCTTTGCAAAGATAACTTTCAAGAAGCCACACATAATATTGCTTGATGAACCATCCAATCATCTG

upper sequence: LOC_Os02g58020.2 (Oryza sativa), 3'ss of exon 15
lower sequence: AT1G64550.1 (Arabidopsis thaliana), 3'ss of exon 15
gtaatgagagcgttttgatagatgtcttaagcatattaaaggctgcatatggcctttcccagtttcatgagaaattgagaactatcctcttgcccaatgattcatctgctcgtagaatcttaaatttgtca-gtcctgattagagcctttccaatcccagGTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCACACATTATTCTTCTCGATGAGCCTTCTAACCATCTT
             | |  |    || ||  |  |  || |  |   ||||      | |  |    |  |  || |  ||||||  |  ||      || |    ||  |        || |  | | | | ||  ||    | |    |   |    ||||||||||||||| || ||||| ||||| ||||| || |||||||| |||||| |  |  | || |||||||| || || ||||||
------------gtatacttcgggtatttggagttgtataaccacaatattctagatgcaggccctagaatgaaattggaactagtcaatttttatgtgttgtggcttgttacgttcactaatgtgttttatgttttgg--ggtgtgaatgggaaattagGTGGTCAGAAAAGCAGAGTTGCATTTGCGAAGATAACATTCAAGAAACCACACTTGCTATTGCTTGATGAGCCGTCCAATCATCTT

upper sequence: LOC_Os02g58020.2 (Oryza sativa), 3'ss of exon 15
lower sequence: Vv02s0025g02160.t01 (Vitis vinifera), 3'ss of exon 15
gtaatgagagcgttttgatagatgtcttaagcatattaaaggctgcatatggcctttcccagtttcatgagaaattgagaactatcctcttgcccaatgattcatctgctcgtagaatcttaaatttgtcagtcctgattagagcctttccaatcccagGTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCACACATTATTCTTCTCGATGAGCCTTCTAACCATCTT
                                                            || || | |      | | | | |||    |    |    ||    |      |   ||| |  | | |   |    |||      | |    |  |||||||||||||||| || ||||| |||||||| || || ||||| || || ||||| || ||||| ||||| || || || ||||||
---------------------------------------------------------ttaagcttgaaggctttgtcacatcaatctctatattaacctgttggcataaaatcattttctcaggtgtatttat--gaattgttctatatgatgtatcagGTGGTCAGAAAAGCAGAGTTGCATTTGCAAAAATAACTTTCAAAAAACCTCACATCATACTTCTTGATGAACCATCAAATCATCTT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|427530|gb|D23597.1|D23597
EST:     TTTCGGTGTTACAGGAAATCTTGCCCTCCAACCAATGTACACTTTATCAG                         GTGGTCAGAAAAGTAGGGTTGCCTTTGCA
genomic: TTTCGGTGTTACAGGAAATCTTGCCCTCCAACCAATGTACACTTTATCAGgtaatgagag ... ccaatcccagGTGGTCAGAAAAGTAGGGTTGCCTTTGCA
EST: gi|22304794|gb|BQ906016.1|BQ906016
EST:     TTCGGTGTTACAGGAAATCTTGCCCTCCAACCAATGTACACTTTATCACG                         GTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCA
genomic: TTCGGTGTTACAGGAAATCTTGCCCTCCAACCAATGTACACTTTATCA-Ggtaatgagag ... ccaatcccagGTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCA
EST: gi|88984480|gb|CI015031.1|CI015031
EST:     TTTCGGTGTTACAGGAAATCTTGCCCTCCAACCAATGTACACTTTATCAG                         GTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
genomic: TTTCGGTGTTACAGGAAATCTTGCCCTCCAACCAATGTACACTTTATCAGgtaatgagag ... ccaatcccagGTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
EST: gi|29623431|gb|CB628442.1|CB628442
EST:     TTTCGGTGTTACAGGAAATCTTGCCCTCCAACCAATGTACACTTTATCAG                         GTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
genomic: TTTCGGTGTTACAGGAAATCTTGCCCTCCAACCAATGTACACTTTATCAGgtaatgagag ... ccaatcccagGTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
EST: gi|88271269|gb|CI387322.1|CI387322
EST:     CAGGAAATCTTGCCCTCCAACCAATGTACACTTTATCAG                         GTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
genomic: CAGGAAATCTTGCCCTCCAACCAATGTACACTTTATCAGgtaatgagag ... ccaatcccagGTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
EST: gi|88295776|gb|CI532737.1|CI532737
EST:     TACACTTTATCAG                         GTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
genomic: TACACTTTATCAGgtaatgagag ... ccaatcccagGTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
EST: gi|88967221|gb|CI392176.1|CI392176
EST:     GGAAATCTTGCCCTCCAACCAAGTGTACACTTTATCAG                         GTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
genomic: GGAAATCTTGCCCTCCAACCAA-TGTACACTTTATCAGgtaatgagag ... ccaatcccagGTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
EST: gi|86874795|gb|CI325306.1|CI325306
EST:     CGGTGTTACAGGAAATCTTGCCCTCCAACCAATGTACACTTTATCAG                         GTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
genomic: CGGTGTTACAGGAAATCTTGCCCTCCAACCAATGTACACTTTATCAGgtaatgagag ... ccaatcccagGTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
EST: gi|86844280|gb|CI337640.1|CI337640
EST:     CAGGAAATCTTGCCCTCCAACCAATGTACACTTTATCAG                         GTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
genomic: CAGGAAATCTTGCCCTCCAACCAATGTACACTTTATCAGgtaatgagag ... ccaatcccagGTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
EST: gi|88543444|gb|CI473452.1|CI473452
EST:     ATGTACACTTTATCAG                         GTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
genomic: ATGTACACTTTATCAGgtaatgagag ... ccaatcccagGTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
EST: gi|88266686|gb|CI377588.1|CI377588
EST:     CTTGCCCTCCAACCAATGTACACTTTATCAG                         GTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
genomic: CTTGCCCTCCAACCAATGTACACTTTATCAGgtaatgagag ... ccaatcccagGTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
EST: gi|88996739|gb|CI389405.1|CI389405
EST:     TCCAACCAATGTACACTTTATCAG                         GTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
genomic: TCCAACCAATGTACACTTTATCAGgtaatgagag ... ccaatcccagGTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
EST: gi|87029075|gb|CI351378.1|CI351378
EST:     TGCCCTCCAACCAATGTACACTTTATCAG                         GTGGTCAGAAAAGTAGGCTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
genomic: TGCCCTCCAACCAATGTACACTTTATCAGgtaatgagag ... ccaatcccagGTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
EST: gi|89188012|gb|CI115261.1|CI115261
EST:     TTTCGGTGTTACAGGAAATCTTGCCCTCCAACCAATGTACACTTTATCAG                         GTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
genomic: TTTCGGTGTTACAGGAAATCTTGCCCTCCAACCAATGTACACTTTATCAGgtaatgagag ... ccaatcccagGTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
EST: gi|88990872|gb|CI108259.1|CI108259
EST:     TTTCGGTGTTACAGGAAATCTTGCCCTCCAACCAATGTACACTTTATCAG                         GTGGTCAGAAAAGTAGGGTTGCCTTTGCGAAGATCACCTTCAAGAAGCCAC
genomic: TTTCGGTGTTACAGGAAATCTTGCCCTCCAACCAATGTACACTTTATCAGgtaatgagag ... ccaatcccagGTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
EST: gi|88235079|gb|CI236281.1|CI236281
EST:     GCCCTCCAACCAATGTACACTTTATCAG                         GTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
genomic: GCCCTCCAACCAATGTACACTTTATCAGgtaatgagag ... ccaatcccagGTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
EST: gi|88836339|gb|CI078236.1|CI078236
EST:     CAGGAAATCTTGCCCTCCAACCAATGTACACTTTATCAG                         GTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
genomic: CAGGAAATCTTGCCCTCCAACCAATGTACACTTTATCAGgtaatgagag ... ccaatcccagGTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
EST: gi|88840514|gb|CI079968.1|CI079968
EST:     CGGTGTTACAGGAAATCTTGCCCTCCAACCAATGTACACTTTATCAG                         GTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
genomic: CGGTGTTACAGGAAATCTTGCCCTCCAACCAATGTACACTTTATCAGgtaatgagag ... ccaatcccagGTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
EST: gi|88449468|gb|CI534027.1|CI534027
EST:     TCCAACCAATGTACACGTTATCAG                         GTGGTCAGAGAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
genomic: TCCAACCAATGTACACTTTATCAGgtaatgagag ... ccaatcccagGTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
EST: gi|88273735|gb|CI394141.1|CI394141
EST:     CAGGAAATGTTGCCCTCCAACCAATGTACACTTTATCAG                         GTGGTCAGAAAAGTAGGGTTGCC-TTGCAAAGATCACCTTCAAGAAGCCAC
genomic: CAGGAAATCTTGCCCTCCAACCAATGTACACTTTATCAGgtaatgagag ... ccaatcccagGTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
EST: gi|86527068|gb|CI167274.1|CI167274
EST:     TTTCGGTGTTACAGGAAATCTTGCCCTCCAACCAATGTACACTTTATCAG                         GTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
genomic: TTTCGGTGTTACAGGAAATCTTGCCCTCCAACCAATGTACACTTTATCAGgtaatgagag ... ccaatcccagGTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
EST: gi|88902499|gb|CI088037.1|CI088037
EST:     TTTCGGTGTTACAGGAAATCTTGCCCTCCAACCAATGTACACTTTATCAG                         GTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
genomic: TTTCGGTGTTACAGGAAATCTTGCCCTCCAACCAATGTACACTTTATCAGgtaatgagag ... ccaatcccagGTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
EST: gi|89166663|gb|CI103949.1|CI103949
EST:     TTTCGGTGTTACAGGAAATCTTGCCCTCCAACCAATGTACACTTTATCAG                         GTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
genomic: TTTCGGTGTTACAGGAAATCTTGCCCTCCAACCAATGTACACTTTATCAGgtaatgagag ... ccaatcccagGTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
EST: gi|89190999|gb|CI392852.1|CI392852
EST:     GTACACTTTATCAG                         GTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
genomic: GTACACTTTATCAGgtaatgagag ... ccaatcccagGTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
EST: gi|88841615|gb|CI080871.1|CI080871
EST:     TTTCGGTGTTACAGGAAATCTTGCCCTCCAACCAATGTACACTTTATCAG                         GTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
genomic: TTTCGGTGTTACAGGAAATCTTGCCCTCCAACCAATGTACACTTTATCAGgtaatgagag ... ccaatcccagGTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
EST: gi|29676044|gb|CB672319.1|CB672319
EST:     TTTCGGTGTTACAGGAAATCTTGCCCTCCAACCAATGTACACTTTATCAG                         GTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
genomic: TTTCGGTGTTACAGGAAATCTTGCCCTCCAACCAATGTACACTTTATCAGgtaatgagag ... ccaatcccagGTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
EST: gi|87013977|gb|CI271368.1|CI271368
EST:     TTTCGGTGTTACAGGAAATCTTGCCCTCCAACCAATGTACACTTTATCAG                         GTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
genomic: TTTCGGTGTTACAGGAAATCTTGCCCTCCAACCAATGTACACTTTATCAGgtaatgagag ... ccaatcccagGTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
EST: gi|88275151|gb|CI395755.1|CI395755
EST:     CCCTCCAACCAATGTACACTTTATCAG                         GTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
genomic: CCCTCCAACCAATGTACACTTTATCAGgtaatgagag ... ccaatcccagGTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
EST: gi|88835148|gb|CI370451.1|CI370451
EST:     CAGGAAATCTTGCCCTCCAACCAATGTACACTTTATCAG                         GTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
genomic: CAGGAAATCTTGCCCTCCAACCAATGTACACTTTATCAGgtaatgagag ... ccaatcccagGTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
EST: gi|86428219|gb|CI074900.1|CI074900
EST:     TTTCGGTGTTACAGGAAATCTTGCCCTCCAACCTATGTACACTTTATCAG                         GTGGTCAGAAAAGTAGGGTTGCCTTTTGCAAAGATCACCTTCAAGAAGCCA
genomic: TTTCGGTGTTACAGGAAATCTTGCCCTCCAACCAATGTACACTTTATCAGgtaatgagag ... ccaatcccagGTGGTCAGAAAAGTAGGGTTGCC-TTTGCAAAGATCACCTTCAAGAAGCCA
EST: gi|86836541|gb|CI348405.1|CI348405
EST:     TCCAACCAATGTACACTTTATCAG                         GTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
genomic: TCCAACCAATGTACACTTTATCAGgtaatgagag ... ccaatcccagGTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
EST: gi|27546087|gb|CA764161.2|CA764161
EST:     TTTCGGTGTTACAGGAAATCTTGCCCTCCAACCAATGTACACTTTATCAG                         GTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
genomic: TTTCGGTGTTACAGGAAATCTTGCCCTCCAACCAATGTACACTTTATCAGgtaatgagag ... ccaatcccagGTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
EST: gi|86874917|gb|CI325385.1|CI325385
EST:     TACAGGAAATCTTGCCCTCCAACCAATGTACACTTTATCAG                         GTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
genomic: TACAGGAAATCTTGCCCTCCAACCAATGTACACTTTATCAGgtaatgagag ... ccaatcccagGTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
EST: gi|88971885|gb|CI390471.1|CI390471
EST:     CAACCAATGTACACTTTATCAG                         GTGGTCAGAAAAGTAGGGTTGCCTTTCCAAAGATCACCTTCAAGAACCCAC
genomic: CAACCAATGTACACTTTATCAGgtaatgagag ... ccaatcccagGTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
EST: gi|58607561|gb|CK035594.1|CK035594
EST:     TTTCGGTGTTACAGGAAATCTTGCCCTCCAACCAATGTACACTTTATCAG                         GTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
genomic: TTTCGGTGTTACAGGAAATCTTGCCCTCCAACCAATGTACACTTTATCAGgtaatgagag ... ccaatcccagGTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
EST: gi|86826402|gb|CI364078.1|CI364078
EST:     TACACTTTATCAG                         GTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
genomic: TACACTTTATCAGgtaatgagag ... ccaatcccagGTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
EST: gi|86871008|gb|CI326827.1|CI326827
EST:     CAACCAATGTACACTTTATCAG                         GTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
genomic: CAACCAATGTACACTTTATCAGgtaatgagag ... ccaatcccagGTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
EST: gi|86496521|gb|CI139154.1|CI139154
EST:     ATCTTGCCCTCCAACCAATGTACACTTTATCAG                         GTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
genomic: ATCTTGCCCTCCAACCAATGTACACTTTATCAGgtaatgagag ... ccaatcccagGTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
EST: gi|88275376|gb|CI395227.1|CI395227
EST:     TACAGGAAATCTTGCCCTCCAACCAATGTACACTTTATCAG                         GTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
genomic: TACAGGAAATCTTGCCCTCCAACCAATGTACACTTTATCAGgtaatgagag ... ccaatcccagGTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
EST: gi|89191075|gb|CI392928.1|CI392928
EST:     AACCAATGTACACTTTATCAG                         GTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
genomic: AACCAATGTACACTTTATCAGgtaatgagag ... ccaatcccagGTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
EST: gi|29676045|gb|CB672320.1|CB672320
EST:     TTTCGGTGTTACAGGAAATCTTGCCCTCCAACCAATGTACACTTTATCAG                         GTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
genomic: TTTCGGTGTTACAGGAAATCTTGCCCTCCAACCAATGTACACTTTATCAGgtaatgagag ... ccaatcccagGTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
EST: gi|88473142|gb|CI410413.1|CI410413
EST:     TTACAGGGAATCTTGCCCTCCAACCAATGTACACTTTATCAG                         GTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
genomic: TTACAGGAAATCTTGCCCTCCAACCAATGTACACTTTATCAGgtaatgagag ... ccaatcccagGTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
EST: gi|88214355|gb|CI214204.1|CI214204
EST:     GCCCTCCAACCAATGTACACTTTATCAG                         GTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
genomic: GCCCTCCAACCAATGTACACTTTATCAGgtaatgagag ... ccaatcccagGTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
EST: gi|58668645|gb|CK057331.1|CK057331
EST:     TTTCGGTGTTACAGGAAATCTTGCCCTCCAACCAATGTACACTTTATCAG                         GTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
genomic: TTTCGGTGTTACAGGAAATCTTGCCCTCCAACCAATGTACACTTTATCAGgtaatgagag ... ccaatcccagGTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
EST: gi|88271270|gb|CI387323.1|CI387323
EST:     TCTTGCCCTCCAACCAATGTACACTTTATCAG                         GTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
genomic: TCTTGCCCTCCAACCAATGTACACTTTATCAGgtaatgagag ... ccaatcccagGTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
EST: gi|89168000|gb|CI109204.1|CI109204
EST:     TTACAGGAAATCTTGCCCTCCAACCAATGTACACTTTATCAG                         GTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
genomic: TTACAGGAAATCTTGCCCTCCAACCAATGTACACTTTATCAGgtaatgagag ... ccaatcccagGTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
EST: gi|86889465|gb|CI317265.1|CI317265
EST:     TTTCGGTGGTACAGGAAATCTTGCCCTCCAACCAATGTACACTTTATCAG                         GTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
genomic: TTTCGGTGTTACAGGAAATCTTGCCCTCCAACCAATGTACACTTTATCAGgtaatgagag ... ccaatcccagGTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
EST: gi|89187105|gb|CI047172.1|CI047172
EST:     TTTCGGTGTTACAGGAAATCTTGCCCTCCAACCAATGTACACTTTATCAG                         GTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
genomic: TTTCGGTGTTACAGGAAATCTTGCCCTCCAACCAATGTACACTTTATCAGgtaatgagag ... ccaatcccagGTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
EST: gi|218495876|gb|FG947058.1|FG947058
EST:     TTTCGGTGTTACAGGAAATCTTGCCCTCCAACCAATGTACACTTTATCAG                         GTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
genomic: TTTCGGTGTTACAGGAAATCTTGCCCTCCAACCAATGTACACTTTATCAGgtaatgagag ... ccaatcccagGTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
EST: gi|88273728|gb|CI394134.1|CI394134
EST:     GCCCTCCAACCAATGTACACTTTATCAGG                         GTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCA
genomic: GCCCTCCAACCAATGTACACTTTATCA-Ggtaatgagag ... ccaatcccagGTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCA
EST: gi|29664090|gb|CB660365.1|CB660365
EST:     TTTCGGTGTTACAGGAAATCTTGCCCTCCAACCAATGTACACTTTATCAG                         GTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
genomic: TTTCGGTGTTACAGGAAATCTTGCCCTCCAACCAATGTACACTTTATCAGgtaatgagag ... ccaatcccagGTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
EST: gi|86903210|gb|CI313573.1|CI313573
EST:     TTTCGGTGTTACAGGAAATCTTGCCCTCCAACCAATGTACACTTTATCAG                         GT-GTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
genomic: TTTCGGTGTTACAGGAAATCTTGCCCTCCAACCAATGTACACTTTATCAGgtaatgagag ... ccaatcccagGTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
EST: gi|8857895|gb|AU095213.1|AU095213
EST:     ATGTACACTTTATCAG                         GTGGTCAGACAAAGTNGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCA
genomic: ATGTACACTTTATCAGgtaatgagag ... ccaatcccagGTGGTCAGA-AAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCA
EST: gi|88997623|gb|CI390260.1|CI390260
EST:     TTTCGGTGTTACAGGAAATCTTGCCCTCCAACCAATGTACACTTTATCAG                         GTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
genomic: TTTCGGTGTTACAGGAAATCTTGCCCTCCAACCAATGTACACTTTATCAGgtaatgagag ... ccaatcccagGTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
EST: gi|29662748|gb|CB659023.1|CB659023
EST:     TTTCGGTGTTACAGGAAATCTTGCCCTCCAACCAATGTACACTTTATCAG                         GTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
genomic: TTTCGGTGTTACAGGAAATCTTGCCCTCCAACCAATGTACACTTTATCAGgtaatgagag ... ccaatcccagGTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
EST: gi|88509702|gb|CI437208.1|CI437208
EST:     TTCGGTGTTACAGGGAAATCTTGCCCTCCAACCAATGTACACTTTATCAG                         GTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
genomic: TTCGGTGTTACA-GGAAATCTTGCCCTCCAACCAATGTACACTTTATCAGgtaatgagag ... ccaatcccagGTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
EST: gi|5455559|gb|AU075774.1|AU075774
EST:     GTTACAGGAAATCTTGCCCTCCAACCAATGTACACTTTATCAG                         GTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
genomic: GTTACAGGAAATCTTGCCCTCCAACCAATGTACACTTTATCAGgtaatgagag ... ccaatcccagGTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
EST: gi|88447229|gb|CI533870.1|CI533870
EST:     CACTTTATCAG                         GTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
genomic: CACTTTATCAGgtaatgagag ... ccaatcccagGTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
EST: gi|88264570|gb|CI368344.1|CI368344
EST:     TTTCGGTGTTACAGGAAATCTTGCCCTCCAACCAATGTACACTTTATCAG                         GTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
genomic: TTTCGGTGTTACAGGAAATCTTGCCCTCCAACCAATGTACACTTTATCAGgtaatgagag ... ccaatcccagGTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
EST: gi|89178988|gb|CI043493.1|CI043493
EST:     TTTCGGTGTTACAGGAAATCTTGCCCTCCAACCGATGTACACTTTATCAG                         GTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
genomic: TTTCGGTGTTACAGGAAATCTTGCCCTCCAACCAATGTACACTTTATCAGgtaatgagag ... ccaatcccagGTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
EST: gi|88272415|gb|CI386270.1|CI386270
EST:     TGCCCTCCAACCAATGTACACTTTATCAG                         GTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
genomic: TGCCCTCCAACCAATGTACACTTTATCAGgtaatgagag ... ccaatcccagGTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
EST: gi|58695639|gb|CK084326.1|CK084326
EST:     TTTCGGTGTTACAGGAAATCTTGCCCTCCAACCAATGTACACTTTATCAG                         GTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
genomic: TTTCGGTGTTACAGGAAATCTTGCCCTCCAACCAATGTACACTTTATCAGgtaatgagag ... ccaatcccagGTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
EST: gi|86866044|gb|CI336792.1|CI336792
EST:     CGGTGTTACAGGAAATCTTGCCCTCCAACCAATGTACACTTTATCAG                         GTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
genomic: CGGTGTTACAGGAAATCTTGCCCTCCAACCAATGTACACTTTATCAGgtaatgagag ... ccaatcccagGTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
EST: gi|87016527|gb|CI273737.1|CI273737
EST:     TTTCGGTGTTACAGGAAATCTTGCCCTCCAACCAATGTACACTTTATCAG                         GTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
genomic: TTTCGGTGTTACAGGAAATCTTGCCCTCCAACCAATGTACACTTTATCAGgtaatgagag ... ccaatcccagGTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
EST: gi|29644367|gb|CB649374.1|CB649374
EST:     TTTCGGTGTTACAGGAAATCTTGCCCTCCAACCAATGTACACTTTATCAG                         GTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
genomic: TTTCGGTGTTACAGGAAATCTTGCCCTCCAACCAATGTACACTTTATCAGgtaatgagag ... ccaatcccagGTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
EST: gi|88266782|gb|CI377684.1|CI377684
EST:     GCCCTCCAACCAATGTACACTTTATCAG                         GTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
genomic: GCCCTCCAACCAATGTACACTTTATCAGgtaatgagag ... ccaatcccagGTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
EST: gi|86872175|gb|CI333336.1|CI333336
EST:     CGGTGTTACAGGAAATCTTGCCCTCCAACCAATGTACACTTTATCAG                         GTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAACCCAC
genomic: CGGTGTTACAGGAAATCTTGCCCTCCAACCAATGTACACTTTATCAGgtaatgagag ... ccaatcccagGTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
EST: gi|58696067|gb|CK084754.1|CK084754
EST:     TTTCGGTGTTACAGGAAATCTTGCCCTCCAACCCATGTACACTTTATCAG                         GTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
genomic: TTTCGGTGTTACAGGAAATCTTGCCCTCCAACCAATGTACACTTTATCAGgtaatgagag ... ccaatcccagGTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
EST: gi|88269766|gb|CI381064.1|CI381064
EST:     CTTGCCCTCCAACCAATGTACACTTTATCAG                         GTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACATTCAAGAAGCCAC
genomic: CTTGCCCTCCAACCAATGTACACTTTATCAGgtaatgagag ... ccaatcccagGTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
EST: gi|218505342|gb|FG953709.1|FG953709
EST:     TTTCGGTGTTACAGGAAATCTTGCCCTCCAACCAATGTACACTTTATCAG                         GTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
genomic: TTTCGGTGTTACAGGAAATCTTGCCCTCCAACCAATGTACACTTTATCAGgtaatgagag ... ccaatcccagGTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
EST: gi|88276865|gb|CI396028.1|CI396028
EST:     AACCAATGTACACTTTATCAG                         GTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC
genomic: AACCAATGTACACTTTATCAGgtaatgagag ... ccaatcccagGTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctgctcgtagaatcttaaatttgtcagtcctgattagagcctttccaatcccagGTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCACACATTATTCTTCTCGATGAGCCTTCTAACCATCTT
                            tcctgat  putative branch site (score: 3)
                                        cctttcc  putative PPT
        tagaatcttaaattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaatgagagcgttttgatagatgtcttaagcatattaaaggctgcatatggcctttcccagtttcatgagaaattgagaactatcctcttgcccaatgattcatctgctcgtagaatcttaaatttgtcagtcctgattagagcctttccaatcccagGTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCACACATTATTCTTCTCGATGAGCCTTCTAACCATCTT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC