1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
gtatgtacttttccttgtttcccctctttacctgaatcgactggcccttttggctggatttctgaacgcataaaacacactaaactagaaatcaactgagctcaccatacttcctgttgcacagAACGCGAAGTCACTTGCTCGTGACCTGATCTCCAAAGATGCATCGATTTACCGGGTGCTCTTAAGTCGGGTACTTGCCGATGTCATCTTCCAGTGGATGG
species | Oryza sativa |
transcript | LOC_Os02g56200.2 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: TTTTACTATCGAAGGAGAGCATTGTGATAAGGAGACTTGTAATGACAGCG AACGCGAAGTCACTTGCTCGTGACCTGATCTCCAAAGATGCATCGATTTACEST: gi|87020926|gb|CI269643.1|CI269643
genomic: TTTTACTATCGAAGGAGAGCATTGTGATAAGGAGACTTGTAATGACAGCGgtatgtactt ... tgttgcacagAACGCGAAGTCACTTGCTCGTGACCTGATCTCCAAAGATGCATCGATTTAC
EST: CGAAGGAGAGCATTGTGATAAGGAGACTTGTAATGACAGCG AACGCGAAGTCACTTGCTCGTGACCTGATCTCCAAAGATGCATCGATTTACEST: gi|29622836|gb|CB627847.1|CB627847
genomic: CGAAGGAGAGCATTGTGATAAGGAGACTTGTAATGACAGCGgtatgtactt ... tgttgcacagAACGCGAAGTCACTTGCTCGTGACCTGATCTCCAAAGATGCATCGATTTAC
EST: TTTTACTATCGAAGGAGAGCATTGTGATAAGGAGACTTGTAATGACAGCG AACGCGAAGTCACTTGCTCGTGACCTGATCTCCAAAGATGCATCGATTTACEST: gi|163925788|gb|EG709608.1|EG709608
genomic: TTTTACTATCGAAGGAGAGCATTGTGATAAGGAGACTTGTAATGACAGCGgtatgtactt ... tgttgcacagAACGCGAAGTCACTTGCTCGTGACCTGATCTCCAAAGATGCATCGATTTAC
EST: TTTTACTATCGAAGGAGAGCATTGTGATAAGGAGACTTGTAATGACAGCG AACGCGAAGTCACTTGCTCGTGACCTGATCTCCAAAGATGCATCGATTTAC
genomic: TTTTACTATCGAAGGAGAGCATTGTGATAAGGAGACTTGTAATGACAGCGgtatgtactt ... tgttgcacagAACGCGAAGTCACTTGCTCGTGACCTGATCTCCAAAGATGCATCGATTTAC
ataaaacacactaaactagaaatcaactgagctcaccatacttcctgttgcacagAACGCGAAGTCACTTGCTCGTGACCTGATCTCCAAAGATGCATCGATTTACCGGGTGCTCTTAAGTCGGGTACTTGCCGATGTCATCTTCCAGTGGATGG
cttcctgtt CT-rich tract
taaacta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtacttttccttgtttcccctctttacctgaatcgactggcccttttggctggatttctgaacgcataaaacacactaaactagaaatcaactgagctcaccatacttcctgttgcacagAACGCGAAGTCACTTGCTCGTGACCTGATCTCCAAAGATGCATCGATTTACCGGGTGCTCTTAAGTCGGGTACTTGCCGATGTCATCTTCCAGTGGATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA