Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacttttattactcctgctctgcataattgaaactatcagatatgtttcataaacattcttatgtttcaaactttcatatttttgacagGAAACAACAATCCAATTTCTGGAAATACAATGCTTAGCCTTCTCTCCAAACTTGCCTCTCTGAAAAG

Basic information

species Oryza sativa
transcript LOC_Os02g54280.1
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g54280.1 (Oryza sativa), 3'ss of exon 15
lower sequence: GRMZM2G472023_T01 (Zea mays), 3'ss of exon 14
gtactt-ttattactcctgctctgcataattgaaactatcagatatgtttcataaacattcttatgtttcaaactttcatatttttgacagGAAACAACAATCCAATTTCTGGAAATACAATGCTTAGCCTTCTCTCCAAACTTGCCTCTCTGAAAAG---------------------------------
|||||| |||| | | | ||         |||  | |  ||       |  |  ||  | |  | |||  ||| || | ||  |||| ||||||| ||||| ||||||||| | ||||||||||||| |||||| ||||||||||| ||||| | |||                                 
gtacttattatcattacggcctgcttctcttgtgatttgca-------tagagcaatgtccaaacgttcaaaaattccgtacctttggcagGAAAGAACAACCCAATTTCTAGCAATACAATGCTTAACCTTCTATCCAAACTTGCATCTCTCACAAGGTTAGCAGAAAATGTCCATATCAGTTGTATAGT

upper sequence: LOC_Os02g54280.1 (Oryza sativa), 3'ss of exon 15
lower sequence: GRMZM2G472023_T02 (Zea mays), 3'ss of exon 14
gtactt-ttattactcctgctctgcataattgaaactatcagatatgtttcataaacattcttatgtttcaaactttcatatttttgacagGAAACAACAATCCAATTTCTGGAAATACAATGCTTAGCCTTCTCTCCAAACTTGCCTCTCTGAAAAG
|||||| |||| | | | ||         |||  | |  ||       |  |  ||  | |  | |||  ||| || | ||  |||| ||||||| ||||| ||||||||| | ||||||||||||| |||||| ||||||||||| ||||| | |||
gtacttattatcattacggcctgcttctcttgtgatttgca-------tagagcaatgtccaaacgttcaaaaattccgtacctttggcagGAAAGAACAACCCAATTTCTAGCAATACAATGCTTAACCTTCTATCCAAACTTGCATCTCTCACAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatcagatatgtttcataaacattcttatgtttcaaactttcatatttttgacagGAAACAACAATCCAATTTCTGGAAATACAATGCTTAGCCTTCTCTCCAAACTTGCCTCTCTGAAAAG
                                           tattttt  CT-rich tract
                                  aaactttcatattttt  TA-rich tract