1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
...caaacaaatgatttctaatgatctggaataaacattctctttttgttgaactctaactgaaaaattcacagatagtatgccatgacacattcattcgtagGTTGTTCCTGGCTTTGGTCATGGAGTTCTACGTAAGACCGATCCACGGTATACATGTCAGAGGGAGTTTGCTTTGAAGTACTTGCCTGAGGATCCACTTT
species | Oryza sativa |
transcript | LOC_Os02g10070.1 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: CAACTGATCAACTCAAAGAGTATGTGTGGAAGACACTAAAAAGTGGAAAG GTTGTTCCTGGCTTTGGTCATGGAGTTCTACGTAAGACCGATCCACGGTATEST: gi|58695418|gb|CK084105.1|CK084105
genomic: CAACTGATCAACTCAAAGAGTATGTGTGGAAGACACTAAAAAGTGGAAAGgtagcttatc ... tcattcgtagGTTGTTCCTGGCTTTGGTCATGGAGTTCTACGTAAGACCGATCCACGGTAT
EST: CAACTGATCAACTCAGAGAGTATGTGTGGAAGACACTAAAAAGTGGAAAG GTTGTTCCTGGCTTTGGTCATGGAGTTCTACGTAAGACCGATCCACGGTATEST: gi|218505577|gb|FG949556.1|FG949556
genomic: CAACTGATCAACTCAAAGAGTATGTGTGGAAGACACTAAAAAGTGGAAAGgtagcttatc ... tcattcgtagGTTGTTCCTGGCTTTGGTCATGGAGTTCTACGTAAGACCGATCCACGGTAT
EST: CAACTGATCAACTCAGAGAGTATGTGTGGAAGACACTAAAAAGTGGAAAG GTTGTTCCTGGCTTTGGTCATGGAGTTCTACGTAAGACCGATCCACGGTATEST: gi|33794400|gb|CF323084.1|CF323084
genomic: CAACTGATCAACTCAAAGAGTATGTGTGGAAGACACTAAAAAGTGGAAAGgtagcttatc ... tcattcgtagGTTGTTCCTGGCTTTGGTCATGGAGTTCTACGTAAGACCGATCCACGGTAT
EST: CAACTGATCAACTCAAAGAGTATGTGTGGAAGACACTAAAAAGTGGAAAG GTTGTTCCTGGCTTTGGTCATGGAGTTCTACGTAAGACCGATCCACGGTATEST: gi|14571277|gb|BI118645.1|BI118645
genomic: CAACTGATCAACTCAAAGAGTATGTGTGGAAGACACTAAAAAGTGGAAAGgtagcttatc ... tcattcgtagGTTGTTCCTGGCTTTGGTCATGGAGTTCTACGTAAGACCGATCCACGGTAT
EST: CAACTGATCCACTCAAAGAGTATGTGTGGAAGCCACTAAAAAGTGGAAAG GTTGTTCCTGGCATCGGTCATGGAGTTGTACGTAAGGCCGATCCACGATATEST: gi|58608873|gb|CK036906.1|CK036906
genomic: CAACTGATCAACTCAAAGAGTATGTGTGGAAGACACTAAAAAGTGGAAAGgtagcttatc ... tcattcgtagGTTGTTCCTGGCTTTGGTCATGGAGTTCTACGTAAGACCGATCCACGGTAT
EST: CAACTGATCAACTCAGAGAGTATGTGTGGAAGACACTAAAAAGTGGAAAG GTGGGTCCTGGCTTTGGTCATGGAGTTCTACGTAAGACCGATCCACGGTATEST: gi|87012999|gb|CI297226.1|CI297226
genomic: CAACTGATCAACTCAAAGAGTATGTGTGGAAGACACTAAAAAGTGGAAAGgtagcttatc ... tcattcgtagGTTGTTCCTGGCTTTGGTCATGGAGTTCTACGTAAGACCGATCCACGGTAT
EST: CAACTGATCAACTCAAAGAGTATGTGTGGAAGACACTAAAAAGTGGAAAG GTTGTTCCTGGCTTTGGTCATGGAGTTCTACGTAAGACCGATCCACGGTATEST: gi|58694362|gb|CK083049.1|CK083049
genomic: CAACTGATCAACTCAAAGAGTATGTGTGGAAGACACTAAAAAGTGGAAAGgtagcttatc ... tcattcgtagGTTGTTCCTGGCTTTGGTCATGGAGTTCTACGTAAGACCGATCCACGGTAT
EST: CAACTGATCAACTCAGAGAGTATGTGTGGAAGACACTAAAAAGTGGAAAG GTTGTTCCTGGCTTTGGTCATGGAGTTCTACGTAAGACCGATCCACGGTATEST: gi|38481573|gb|CF965662.1|CF965662
genomic: CAACTGATCAACTCAAAGAGTATGTGTGGAAGACACTAAAAAGTGGAAAGgtagcttatc ... tcattcgtagGTTGTTCCTGGCTTTGGTCATGGAGTTCTACGTAAGACCGATCCACGGTAT
EST: CAACTGATCAACTCAGAGAGTATGTGTGGAAGACACTAAAAAGTGGAAAG GTTGTTCCTGGCTTTGGTCATGGAGTTCTACGTAAGACCGATCCACGGTAT
genomic: CAACTGATCAACTCAAAGAGTATGTGTGGAAGACACTAAAAAGTGGAAAGgtagcttatc ... tcattcgtagGTTGTTCCTGGCTTTGGTCATGGAGTTCTACGTAAGACCGATCCACGGTAT
ttgaactctaactgaaaaattcacagatagtatgccatgacacattcattcgtagGTTGTTCCTGGCTTTGGTCATGGAGTTCTACGTAAGACCGATCCACGGTATACATGTCAGAGGGAGTTTGCTTTGAAGTACTTGCCTGAGGATCCACTTT
ctctaac putative branch site (score: 26)
ttcattc putative PPT
tgaaaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caaacaaatgatttctaatgatctggaataaacattctctttttgttgaactctaactgaaaaattcacagatagtatgccatgacacattcattcgtagGTTGTTCCTGGCTTTGGTCATGGAGTTCTACGTAAGACCGATCCACGGTATACATGTCAGAGGGAGTTTGCTTTGAAGTACTTGCCTGAGGATCCACTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
-aaacaaa
- - - - - - - - - tgatctg
- - - - - - - - - - - - -gaataaa
- - - - - - - - - - - - - - - - cattctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtatgcc