1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
gtcagtgattcaccgtaatatgcatttcttaattttagtttcataattgtgttagatcaattgtctccaaatgttgtctgaactttctagtttgcttgcttattttccgttacaatatgcagTTCTCGTCCTCGTGCTGAACAACATCTTGTTAGATGGGCTGATTCTCAATTTCATGACATTGAGTCCATATCAAAGATGGTTGATCCTTCTATTCAAGGA
species | Oryza sativa |
transcript | LOC_Os02g07960.2 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: TTTGGCGTGGTAATGCTAGAACTTCTCACTGGCCGTAAACCATATGACAG TTCTCGTCCTCGTGCTGAAGAACATCTTGTTAGATGGGCTGATTCTCAATTEST: gi|29621906|gb|CB626917.1|CB626917
genomic: TTTGGCGTGGTAATGCTAGAACTTCTCACTGGCCGTAAACCATATGACAGgtcagtgatt ... caatatgcagTTCTCGTCCTCGTGCTGAACAACATCTTGTTAGATGGGCTGATTCTCAATT
EST: TTTGGCGTGGTAATGCTAGAACTTCTCACTGGCCGTAAACCATATGACAG TTCTCGTCCTCGTGCTGAACAACATCTTGTTAGATGGGCTGATTCTCAATTEST: gi|58687945|gb|CK076632.1|CK076632
genomic: TTTGGCGTGGTAATGCTAGAACTTCTCACTGGCCGTAAACCATATGACAGgtcagtgatt ... caatatgcagTTCTCGTCCTCGTGCTGAACAACATCTTGTTAGATGGGCTGATTCTCAATT
EST: TGGTAATGCTAGAACTTCTCACTGGCCGTAAACCATATGACAG TTCTCGTCCTCGTGCTGAACAACATCTTGTTAGATGGGCTGATTCTCAATTEST: gi|29656568|gb|CB652843.1|CB652843
genomic: TGGTAATGCTAGAACTTCTCACTGGCCGTAAACCATATGACAGgtcagtgatt ... caatatgcagTTCTCGTCCTCGTGCTGAACAACATCTTGTTAGATGGGCTGATTCTCAATT
EST: TTTGGCGTGGTAATGCTAGAACTTCTCACTGGCCGTAAACCATATGACAG TTCTCGTCCTCGTGCTGAACAACATCTTGTTAGATGGGCTGATTCTCAATTEST: gi|58611356|gb|CK039068.1|CK039068
genomic: TTTGGCGTGGTAATGCTAGAACTTCTCACTGGCCGTAAACCATATGACAGgtcagtgatt ... caatatgcagTTCTCGTCCTCGTGCTGAACAACATCTTGTTAGATGGGCTGATTCTCAATT
EST: TTTGGCGTGGTAATGCTAGAACTTCTCACTGGCCGTAAACCATATGACAG TTCTCGTCCTCGTGCTGAACAACATCTTGTTAGATGGGCTGATTCTCAATTEST: gi|29626065|gb|CB631076.1|CB631076
genomic: TTTGGCGTGGTAATGCTAGAACTTCTCACTGGCCGTAAACCATATGACAGgtcagtgatt ... caatatgcagTTCTCGTCCTCGTGCTGAACAACATCTTGTTAGATGGGCTGATTCTCAATT
EST: TTTGGCGTGGTAATGCTAGAACTTCTCACTGGCCGTAAACCATATGACAG TTCTCGTCCTCGTGCTGAACAACATCTTGTTAGATGGGCTGATTCTCAATTEST: gi|29626028|gb|CB631039.1|CB631039
genomic: TTTGGCGTGGTAATGCTAGAACTTCTCACTGGCCGTAAACCATATGACAGgtcagtgatt ... caatatgcagTTCTCGTCCTCGTGCTGAACAACATCTTGTTAGATGGGCTGATTCTCAATT
EST: TTTGGCGTGGTAATGCTAGAACTTCTCACTGGCCGTAAACCATATGACAG TTCTCGTCCTCGTGCTGAACAACATCTTGTTAGATGGGCTGATTCTCAATTEST: gi|29640907|gb|CB645914.1|CB645914
genomic: TTTGGCGTGGTAATGCTAGAACTTCTCACTGGCCGTAAACCATATGACAGgtcagtgatt ... caatatgcagTTCTCGTCCTCGTGCTGAACAACATCTTGTTAGATGGGCTGATTCTCAATT
EST: TTTGGCGTGGTAATGCTAGAACTTCTCACTGGCCGTAAACCATATGACAG TTCTCGTCCTCGTGCTGAACAACATCTTGTTAGATGGGCTGATTCTCAATTEST: gi|66927345|gb|CX114193.1|CX114193
genomic: TTTGGCGTGGTAATGCTAGAACTTCTCACTGGCCGTAAACCATATGACAGgtcagtgatt ... caatatgcagTTCTCGTCCTCGTGCTGAACAACATCTTGTTAGATGGGCTGATTCTCAATT
EST: TTTGGCGTGGTAATGCTAGAACTTCTCACTGGCCGTAAACCATATGACAG TTCTCGTCCTCGTGCTGAACAACATCTTGTTAGATGGGCTGATTCTCAATTEST: gi|29674397|gb|CB670672.1|CB670672
genomic: TTTGGCGTGGTAATGCTAGAACTTCTCACTGGCCGTAAACCATATGACAGgtcagtgatt ... caatatgcagTTCTCGTCCTCGTGCTGAACAACATCTTGTTAGATGGGCTGATTCTCAATT
EST: TTTGGTGTGGTAATGCTAGAACTTCTCACTGGCCGTAAACCATATGACAG TTCTCGTCCTCGTGCTGAACAACATCTTGTTAGATGGGCTGATTCTCAATTEST: gi|29671438|gb|CB667713.1|CB667713
genomic: TTTGGCGTGGTAATGCTAGAACTTCTCACTGGCCGTAAACCATATGACAGgtcagtgatt ... caatatgcagTTCTCGTCCTCGTGCTGAACAACATCTTGTTAGATGGGCTGATTCTCAATT
EST: TTTGGCGTGGTAATGCTAGAACTTCTCACTGGCCGTAAACCATATGACAG TTCTCGTCCTCGTGCTGAACAACATCTTGTTAGATGGGCTGATTCTCAATTEST: gi|29638004|gb|CB643013.1|CB643013
genomic: TTTGGCGTGGTAATGCTAGAACTTCTCACTGGCCGTAAACCATATGACAGgtcagtgatt ... caatatgcagTTCTCGTCCTCGTGCTGAACAACATCTTGTTAGATGGGCTGATTCTCAATT
EST: TTTGGCGTGGTAATGCTAGAACTTCTCACTGGCCGTAAACCATATGACAG TTCTCGTCCTCGTGCTGAACAACATCTTGTTAGATGGGCTGATTCTCAATTEST: gi|29631499|gb|CB636508.1|CB636508
genomic: TTTGGCGTGGTAATGCTAGAACTTCTCACTGGCCGTAAACCATATGACAGgtcagtgatt ... caatatgcagTTCTCGTCCTCGTGCTGAACAACATCTTGTTAGATGGGCTGATTCTCAATT
EST: GCCGTAAACCATATGACAG TTCTCGTCCTCGTGCTGAACAACATCTTGTTAGATGGGCTGATTCTCAATTEST: gi|58690978|gb|CK079665.1|CK079665
genomic: GCCGTAAACCATATGACAGgtcagtgatt ... caatatgcagTTCTCGTCCTCGTGCTGAACAACATCTTGTTAGATGGGCTGATTCTCAATT
EST: TTTGGCGTGGTAATGCTAGAACTTCTCACTGGCCGTAAACCATATGACAG TTCTCGTCCTCGTGCTGAACAACATCTTGTTAGATGGGCTGATTCTCAATT
genomic: TTTGGCGTGGTAATGCTAGAACTTCTCACTGGCCGTAAACCATATGACAGgtcagtgatt ... caatatgcagTTCTCGTCCTCGTGCTGAACAACATCTTGTTAGATGGGCTGATTCTCAATT
caaatgttgtctgaactttctagtttgcttgcttattttccgttacaatatgcagTTCTCGTCCTCGTGCTGAACAACATCTTGTTAGATGGGCTGATTCTCAATTTCATGACATTGAGTCCATATCAAAGATGGTTGATCCTTCTATTCAAGGA
ttacaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagtgattcaccgtaatatgcatttcttaattttagtttcataattgtgttagatcaattgtctccaaatgttgtctgaactttctagtttgcttgcttattttccgttacaatatgcagTTCTCGTCCTCGTGCTGAACAACATCTTGTTAGATGGGCTGATTCTCAATTTCATGACATTGAGTCCATATCAAAGATGGTTGATCCTTCTATTCAAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG