1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...agaactaggtattcacaatcggagggggcacaataaaaggctatttctctttatatagcttgatcgacttgtattaattatctggatattccttgtcaagCTGGTGAGTACCCTCGAAGGGGTCCAAGTGAGATGGGGTCAATGCCATTTCCTCCAGGGGTGGGTGAACGTTCTAGCGGTGAAATTGGCAATACTGAAAA
species | Oryza sativa |
transcript | LOC_Os02g07070.1 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: ATATGGATCATCTTCTTCACTTGGAAGTGATAATGATGGACTGGATCCAA CTGGTGAGTACCCTCGAAGGGGTCCAAGTGAGATGGGGTCAATGCCATTTCEST: gi|5002727|gb|AU067836.1|AU067836
genomic: ATATGGATCATCTTCTTCACTTGGAAGTGATAATGATGGACTGGATCCAAgtaagaatgc ... ccttgtcaagCTGGTGAGTACCCTCGAAGGGGTCCAAGTGAGATGGGGTCAATGCCATTTC
EST: ATATGGATCATCTTCTTCACTTGGAAGTGATAATGATGGACTGGATCCAA CTGGTGAGTACCCTCGAAGGGGTCCAAGTGAGATGGGGTCAATGCCATTTCEST: gi|29628858|gb|CB633869.1|CB633869
genomic: ATATGGATCATCTTCTTCACTTGGAAGTGATAATGATGGACTGGATCCAAgtaagaatgc ... ccttgtcaagCTGGTGAGTACCCTCGAAGGGGTCCAAGTGAGATGGGGTCAATGCCATTTC
EST: ATATGGATCATCTTCTTCACTTGGAAGTGATAATGATGGACTGGATCCAA CTGGTGAGTACCCTCGAAGGGGTCCAAGTGAGATGGGGTCAATGCCATTTCEST: gi|11442773|gb|BF430675.1|BF430675
genomic: ATATGGATCATCTTCTTCACTTGGAAGTGATAATGATGGACTGGATCCAAgtaagaatgc ... ccttgtcaagCTGGTGAGTACCCTCGAAGGGGTCCAAGTGAGATGGGGTCAATGCCATTTC
EST: ATATGGATCATCTTCTTCACTTGGAAGTGATAATGATGGACTGGATCCAA CTGGTGAGTACCCTCGAAGGGGTCCAAGTGAGATGGGGTCAATGCCATTTCEST: gi|87023328|gb|CI272156.1|CI272156
genomic: ATATGGATCATCTTCTTCACTTGGAAGTGATAATGATGGACTGGATCCAAgtaagaatgc ... ccttgtcaagCTGGTGAGTACCCTCGAAGGGGTCCAAGTGAGATGGGGTCAATGCCATTTC
EST: ATATGGATCATCTTCTTCACTTGGAAGTGATAATGATGGACTGGATCCAA CTGGTGAGTACCCTCGAAGGGGT-CAAGTGAGATGGGGTCAATGCCATTTCEST: gi|86414717|gb|CI069120.1|CI069120
genomic: ATATGGATCATCTTCTTCACTTGGAAGTGATAATGATGGACTGGATCCAAgtaagaatgc ... ccttgtcaagCTGGTGAGTACCCTCGAAGGGGTCCAAGTGAGATGGGGTCAATGCCATTTC
EST: ATCTTCTTCACTTGGAAGTGATAATGATGGACTGGATCCAA CTGGTGAGTACCCTCGAAGGGGTCCAAGTGAGATGGGGTCAATGCCATTTCEST: gi|87021461|gb|CI274068.1|CI274068
genomic: ATCTTCTTCACTTGGAAGTGATAATGATGGACTGGATCCAAgtaagaatgc ... ccttgtcaagCTGGTGAGTACCCTCGAAGGGGTCCAAGTGAGATGGGGTCAATGCCATTTC
EST: ATATGGATCATCTTCTTCACTTGGAAGTGATAATGATGGACTGGATCCAA CTGGTGAGTACCCTCGAAGGGGTCCAAGTGAGATGGGGTCAATGCCATTTC
genomic: ATATGGATCATCTTCTTCACTTGGAAGTGATAATGATGGACTGGATCCAAgtaagaatgc ... ccttgtcaagCTGGTGAGTACCCTCGAAGGGGTCCAAGTGAGATGGGGTCAATGCCATTTC
tctctttatatagcttgatcgacttgtattaattatctggatattccttgtcaagCTGGTGAGTACCCTCGAAGGGGTCCAAGTGAGATGGGGTCAATGCCATTTCCTCCAGGGGTGGGTGAACGTTCTAGCGGTGAAATTGGCAATACTGAAAA
tattaat putative branch site (score: 10)
ttccttgtc putative PPT
acttgtattaattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agaactaggtattcacaatcggagggggcacaataaaaggctatttctctttatatagcttgatcgacttgtattaattatctggatattccttgtcaagCTGGTGAGTACCCTCGAAGGGGTCCAAGTGAGATGGGGTCAATGCCATTTCCTCCAGGGGTGGGTGAACGTTCTAGCGGTGAAATTGGCAATACTGAAAA
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