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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcgtctgcttcatatactagtaacgtacttggcagtttttgccgttagtactttgctctgacagagtgatgcttgtctcgttccagGAGAAATGGTCCAAGAATCTCTACCTTGCATCAGTATGCTATGGACGTACTGTATCCTAGAAATCTGGCCATCTAGTTGAAGCCATTTCGAGTTCTAGGC

Basic information

species Oryza sativa
transcript LOC_Os01g54100.1
intron # 15
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88997977|gb|CI037862.1|CI037862
EST:     AAACTCAAGAGACGCTGAGAACATCTGCTTTCCCTAGTCTACATGTCAAG                         GAGAAATGGTCCAAGAATCTCTACCTTGCATCAGTATGCTATGGACGTACT
genomic: AAACTCAAGAGACGCTGAGAACATCTGCTTTCCCTAGTCAACATGTCAAGgttcgtctgc ... ctcgttccagGAGAAATGGTCCAAGAATCTCTACCTTGCATCAGTATGCTATGGACGTACT
EST: gi|29687708|gb|CB683983.1|CB683983
EST:     AAACTCAAGAGACGCTGAGAACATCTGCTTTCCCTAGTCAACATGTCAAG                         GAGAAATGGTCCAAGAATCTCTACCTTGCATCAGTATGCTATGGACGTACT
genomic: AAACTCAAGAGACGCTGAGAACATCTGCTTTCCCTAGTCAACATGTCAAGgttcgtctgc ... ctcgttccagGAGAAATGGTCCAAGAATCTCTACCTTGCATCAGTATGCTATGGACGTACT
EST: gi|88846324|gb|CI373092.1|CI373092
EST:     AAACTCAAGAGACGCTGAGAACATCTGCTTTCCCTAGTCAACATGTCAAG                         GAGAAATGGTCCAAGAATCTCTACCTTGCATCAGTATGCTATGGACGTACT
genomic: AAACTCAAGAGACGCTGAGAACATCTGCTTTCCCTAGTCAACATGTCAAGgttcgtctgc ... ctcgttccagGAGAAATGGTCCAAGAATCTCTACCTTGCATCAGTATGCTATGGACGTACT
EST: gi|88263675|gb|CI366576.1|CI366576
EST:     AAACTCAAGAGACTCTGAGAACATCTGCTTTCCCTAGTCAACATGTCAAG                         GAGAAATGGTCCAAGAATCTCTACCTTGCATCAGTATGCTATGGACGTACT
genomic: AAACTCAAGAGACGCTGAGAACATCTGCTTTCCCTAGTCAACATGTCAAGgttcgtctgc ... ctcgttccagGAGAAATGGTCCAAGAATCTCTACCTTGCATCAGTATGCTATGGACGTACT
EST: gi|88469214|gb|CI406485.1|CI406485
EST:     TCCCTAGTCAACATGTCAAG                         GAGAAATGGTCCAAGAATCTCTACCTTGCATCAGTATGCTATGGACGTACT
genomic: TCCCTAGTCAACATGTCAAGgttcgtctgc ... ctcgttccagGAGAAATGGTCCAAGAATCTCTACCTTGCATCAGTATGCTATGGACGTACT
EST: gi|9865453|gb|AU101203.1|AU101203
EST:     AAACTCAAGAGACGCTGAGAACATCTGCTTTCCCTAGTCAACATGTCAAG                         GAGAAATGGTCCAAGAATCTCTACCTTGCATCAGTATGCTATGGACGTACT
genomic: AAACTCAAGAGACGCTGAGAACATCTGCTTTCCCTAGTCAACATGTCAAGgttcgtctgc ... ctcgttccagGAGAAATGGTCCAAGAATCTCTACCTTGCATCAGTATGCTATGGACGTACT
EST: gi|88852348|gb|CI374116.1|CI374116
EST:     AGAGACGCTGAGAACATCTGCTTTCCCTAGTCAACATGTCAAG                         GAGAAATGGTCCAAGAATCTCTACCTTGCATCAGTATGCTATGGACGTACT
genomic: AGAGACGCTGAGAACATCTGCTTTCCCTAGTCAACATGTCAAGgttcgtctgc ... ctcgttccagGAGAAATGGTCCAAGAATCTCTACCTTGCATCAGTATGCTATGGACGTACT
EST: gi|58692699|gb|CK081386.1|CK081386
EST:     AAACTCAAGAGACGCTGAGAACATCTGCTTTCCCTAGTCAACATGTCAAG                         GAGAAATGGTCCAAGAATCTCTACCTTGCATCAGTATGCTATGGACGTACT
genomic: AAACTCAAGAGACGCTGAGAACATCTGCTTTCCCTAGTCAACATGTCAAGgttcgtctgc ... ctcgttccagGAGAAATGGTCCAAGAATCTCTACCTTGCATCAGTATGCTATGGACGTACT
EST: gi|88198805|gb|CI197278.1|CI197278
EST:     AAACTCAAGAGACGCTGAGAACATCTGCTTTCCCTAGTCAACATGTCAAG                         GAGAAATGGTCCAAGAATCTCTACCTTGCATCAGTATGCTATGGACGTACT
genomic: AAACTCAAGAGACGCTGAGAACATCTGCTTTCCCTAGTCAACATGTCAAGgttcgtctgc ... ctcgttccagGAGAAATGGTCCAAGAATCTCTACCTTGCATCAGTATGCTATGGACGTACT
EST: gi|58693298|gb|CK081985.1|CK081985
EST:     AAACTCAAGAGACGCTGAGAACATCTGCTTTCCCTAGTCAACATGTCAAG                         GAGAAATGGTCCAAGAATCTCTACCTTGCATCAGTATGCTATGGACGTACT
genomic: AAACTCAAGAGACGCTGAGAACATCTGCTTTCCCTAGTCAACATGTCAAGgttcgtctgc ... ctcgttccagGAGAAATGGTCCAAGAATCTCTACCTTGCATCAGTATGCTATGGACGTACT
EST: gi|88507387|gb|CI434893.1|CI434893
EST:     CATCTGCTTTCCCTAGTCAACATGTCAAG                         GAGAAATGGTCCAAGAATCTCTACCTTGCATCAGTATGCTATGGACGTACT
genomic: CATCTGCTTTCCCTAGTCAACATGTCAAGgttcgtctgc ... ctcgttccagGAGAAATGGTCCAAGAATCTCTACCTTGCATCAGTATGCTATGGACGTACT
EST: gi|88843426|gb|CI372326.1|CI372326
EST:     AAACTCAAGAGACGCTGAGAACATCTGCTTTCCCTAGTCAACATGTCAAG                         GAGAAATGGTCCAAGAATCTCTACCTTGCATCAATATGCTATGGACGTACT
genomic: AAACTCAAGAGACGCTGAGAACATCTGCTTTCCCTAGTCAACATGTCAAGgttcgtctgc ... ctcgttccagGAGAAATGGTCCAAGAATCTCTACCTTGCATCAGTATGCTATGGACGTACT
EST: gi|33809168|gb|CF330468.1|CF330468
EST:     AAACTCAAGAGACGCTGAGAACATCTGCTTTCCCTAGTCAACATGTCAAG                         GAGAAATGGTCCAAGAATCTCTACCTTGCATCAGTATGCTATGGACGTACT
genomic: AAACTCAAGAGACGCTGAGAACATCTGCTTTCCCTAGTCAACATGTCAAGgttcgtctgc ... ctcgttccagGAGAAATGGTCCAAGAATCTCTACCTTGCATCAGTATGCTATGGACGTACT
EST: gi|29687566|gb|CB683841.1|CB683841
EST:     AAACTCAAGAGACGCTGAGAACATCTGCTTTCCCTAGTCAACATGTCAAG                         GAGAAATGGTCCAAGAATCTCTACCTTGCATCAGTATGCTATGGACGTACT
genomic: AAACTCAAGAGACGCTGAGAACATCTGCTTTCCCTAGTCAACATGTCAAGgttcgtctgc ... ctcgttccagGAGAAATGGTCCAAGAATCTCTACCTTGCATCAGTATGCTATGGACGTACT
EST: gi|88964907|gb|CI084905.1|CI084905
EST:     AAACTCAAGAGACGCTGAGAACATCTGCTTTCCCTAGTCAACATGTCAAG                         GAGAAATGGTCCAAGAATCTCTACCTTGCATCAGTATGCTATGGACGTACT
genomic: AAACTCAAGAGACGCTGAGAACATCTGCTTTCCCTAGTCAACATGTCAAGgttcgtctgc ... ctcgttccagGAGAAATGGTCCAAGAATCTCTACCTTGCATCAGTATGCTATGGACGTACT
EST: gi|25806191|gb|CA762152.1|CA762152
EST:     AAACTCAAGAGACGCTGAGAACATTTGCTTTCCCTAGTCAACATGTCAAG                         GAGAAATGGTCCAAGAATCTCTACCTTGCATCAGTATGCTATGGACGTACT
genomic: AAACTCAAGAGACGCTGAGAACATCTGCTTTCCCTAGTCAACATGTCAAGgttcgtctgc ... ctcgttccagGAGAAATGGTCCAAGAATCTCTACCTTGCATCAGTATGCTATGGACGTACT
EST: gi|58681713|gb|CK070400.1|CK070400
EST:     AAACTCAAGAGACGCTGAGAACATCTGCTTTCCCTAGTCAACATGTCAAG                         GAGAAATGGTCCAAGAATCTCTACCTTGCATCAGTATGCTATGGACGTACT
genomic: AAACTCAAGAGACGCTGAGAACATCTGCTTTCCCTAGTCAACATGTCAAGgttcgtctgc ... ctcgttccagGAGAAATGGTCCAAGAATCTCTACCTTGCATCAGTATGCTATGGACGTACT
EST: gi|88852329|gb|CI374097.1|CI374097
EST:     AGAGACGCTGAGAACATCTGCTTTCCCTAGTCAACATGTCAAG                         GAGAAATGGTCCAAGAATCTCTACCTTGCATCAGTATGCTATGGACGTACT
genomic: AGAGACGCTGAGAACATCTGCTTTCCCTAGTCAACATGTCAAGgttcgtctgc ... ctcgttccagGAGAAATGGTCCAAGAATCTCTACCTTGCATCAGTATGCTATGGACGTACT
EST: gi|29634049|gb|CB639058.1|CB639058
EST:     AAACTCAAGAGACGCTGAGAACATCTGCTTTCCCTAGTCAACATGTCAAG                         GAGAAATGGTCCAAGAATCTCTACCTTGCATCAGTATGCTATGGACGTACT
genomic: AAACTCAAGAGACGCTGAGAACATCTGCTTTCCCTAGTCAACATGTCAAGgttcgtctgc ... ctcgttccagGAGAAATGGTCCAAGAATCTCTACCTTGCATCAGTATGCTATGGACGTACT
EST: gi|218494323|gb|FG952810.1|FG952810
EST:     AAACTCAAGAGACGCTGAGAACATCTGCTTTCCCTAGTCAACATGTCAAG                         GAGAAATGGTCCAAGAATCTCTACCTTGCATCAGTATGCTATGGACGTACT
genomic: AAACTCAAGAGACGCTGAGAACATCTGCTTTCCCTAGTCAACATGTCAAGgttcgtctgc ... ctcgttccagGAGAAATGGTCCAAGAATCTCTACCTTGCATCAGTATGCTATGGACGTACT
EST: gi|86889762|gb|CI299960.1|CI299960
EST:     AAACTCAAGAGACGCTGAGAACATCTGCTTTCCCTAGTCAACATGTCAAG                         GAGAAATGGTCCAAGAATCTCTACCTTGCATCAGTATGCTATGGACGTACT
genomic: AAACTCAAGAGACGCTGAGAACATCTGCTTTCCCTAGTCAACATGTCAAGgttcgtctgc ... ctcgttccagGAGAAATGGTCCAAGAATCTCTACCTTGCATCAGTATGCTATGGACGTACT
EST: gi|88382131|gb|CI533335.1|CI533335
EST:     AAACTCAAGAGACGCTGAGAACATCTGCTTTCCCTAGTCAACATGTCAAG                         GAGAAATGGTCCAAGAATCTCTACCTTGCATCAGTATGCTATGGACGTACT
genomic: AAACTCAAGAGACGCTGAGAACATCTGCTTTCCCTAGTCAACATGTCAAGgttcgtctgc ... ctcgttccagGAGAAATGGTCCAAGAATCTCTACCTTGCATCAGTATGCTATGGACGTACT
EST: gi|29634007|gb|CB639016.1|CB639016
EST:     AAACTCAAGAGACGCTGAGAACATCTGCTTTCCCTAGTCAACATGTCAAG                         GAGAAATGGTCCAAGAATCTCTACCTTGCATCAGTATGCTATGGACGTACT
genomic: AAACTCAAGAGACGCTGAGAACATCTGCTTTCCCTAGTCAACATGTCAAGgttcgtctgc ... ctcgttccagGAGAAATGGTCCAAGAATCTCTACCTTGCATCAGTATGCTATGGACGTACT
EST: gi|88265081|gb|CI368855.1|CI368855
EST:     AAACTCAAGAGACGCTGAGAACATCTGCTTTCCCTAGTCAACATGTCAAG                         GAGAAATGGTCCAAGAATCTCTACCTTGCATCAGTATGCTATGGACGTACT
genomic: AAACTCAAGAGACGCTGAGAACATCTGCTTTCCCTAGTCAACATGTCAAGgttcgtctgc ... ctcgttccagGAGAAATGGTCCAAGAATCTCTACCTTGCATCAGTATGCTATGGACGTACT
EST: gi|88268070|gb|CI378842.1|CI378842
EST:     AAGAGACGCTGAG-ACATCTGCTTTCCCTAGTCAACATGTCAAG                         GAGAAATGGTCCAAGAATCTCTACCTTGCATCAGTATGCTATGGACGTACT
genomic: AAGAGACGCTGAGAACATCTGCTTTCCCTAGTCAACATGTCAAGgttcgtctgc ... ctcgttccagGAGAAATGGTCCAAGAATCTCTACCTTGCATCAGTATGCTATGGACGTACT
EST: gi|58662861|gb|CK051547.1|CK051547
EST:     AAACTCAAGAGACGCTGAGAACATCTGCTTTCCCTAGTCAACATGTCAAG                         GAGAAATGGTCCAAGAATCTCTACCTTGCATCAGTATGCTATGGACGTACT
genomic: AAACTCAAGAGACGCTGAGAACATCTGCTTTCCCTAGTCAACATGTCAAGgttcgtctgc ... ctcgttccagGAGAAATGGTCCAAGAATCTCTACCTTGCATCAGTATGCTATGGACGTACT
EST: gi|13806117|gb|AU181363.1|AU181363
EST:     ACTCAAGAGACGCTGAGAACATCTGCTTTCCCTAGTCAACATGTCAAG                         GAGAAATGGTCCAAGAATCTCTACCTTGCATCAGTATGCTATGGACGTACT
genomic: ACTCAAGAGACGCTGAGAACATCTGCTTTCCCTAGTCAACATGTCAAGgttcgtctgc ... ctcgttccagGAGAAATGGTCCAAGAATCTCTACCTTGCATCAGTATGCTATGGACGTACT
EST: gi|88250702|gb|CI348932.1|CI348932
EST:     AAACTCAAGAGACGCTGAGAACATCTGCTTTCCCTAGTCAACATGTCAAG                         GAGAAATGGTCCAAGAATCTCTACCTTGCATCAGTATGCTATGGACGTACT
genomic: AAACTCAAGAGACGCTGAGAACATCTGCTTTCCCTAGTCAACATGTCAAGgttcgtctgc ... ctcgttccagGAGAAATGGTCCAAGAATCTCTACCTTGCATCAGTATGCTATGGACGTACT
EST: gi|88970343|gb|CI383845.1|CI383845
EST:     AAACTCAAGAGACGCTGAGAACATCTGCTTTCCCTAGTCAACATGTCAAG                         GAGAAATGGTCCAAGAATCTCTACCTTGCATCAGTATGCTATGGACGTACT
genomic: AAACTCAAGAGACGCTGAGAACATCTGCTTTCCCTAGTCAACATGTCAAGgttcgtctgc ... ctcgttccagGAGAAATGGTCCAAGAATCTCTACCTTGCATCAGTATGCTATGGACGTACT
EST: gi|29625957|gb|CB630968.1|CB630968
EST:     AAACTCAAGAGACGCTGAGAACATCTGCTTTCCCTAGTCAACATGTCAAG                         GAGAAATGGTCCAAGAATCTCTACCTTGCATCAGTATGCTATGGACGTACT
genomic: AAACTCAAGAGACGCTGAGAACATCTGCTTTCCCTAGTCAACATGTCAAGgttcgtctgc ... ctcgttccagGAGAAATGGTCCAAGAATCTCTACCTTGCATCAGTATGCTATGGACGTACT
EST: gi|88846339|gb|CI373107.1|CI373107
EST:     AAACTCAAGAGACGCTGAGAACATCTGCTTTCCCTAGTCAACATGTCAAG                         GAGAAATGGTCCAAGAATCTCTACCTTGCATCAGTATGCTATGGACGTACT
genomic: AAACTCAAGAGACGCTGAGAACATCTGCTTTCCCTAGTCAACATGTCAAGgttcgtctgc ... ctcgttccagGAGAAATGGTCCAAGAATCTCTACCTTGCATCAGTATGCTATGGACGTACT
EST: gi|88226263|gb|CI226179.1|CI226179
EST:     AAACTCAAGAGACGCTGAGAACATCTGCTTTCCCTAGTCAACATGTCAAG                         GAGAAATGGTCCAAGAATCTCTACCTTGCATCAGTATGCTATGGACGTACT
genomic: AAACTCAAGAGACGCTGAGAACATCTGCTTTCCCTAGTCAACATGTCAAGgttcgtctgc ... ctcgttccagGAGAAATGGTCCAAGAATCTCTACCTTGCATCAGTATGCTATGGACGTACT
EST: gi|88503490|gb|CI430996.1|CI430996
EST:     AAACTCAAGAGACGCTGAGAACATCTGCTTTCCCTAGTCAACATGTCAAG                         GAGAAATGGTCCAAGAATCTCTACCTTGCATCAGTATGCTATGGACGTACT
genomic: AAACTCAAGAGACGCTGAGAACATCTGCTTTCCCTAGTCAACATGTCAAGgttcgtctgc ... ctcgttccagGAGAAATGGTCCAAGAATCTCTACCTTGCATCAGTATGCTATGGACGTACT
EST: gi|58687467|gb|CK076154.1|CK076154
EST:     AAACTCAAGAGACGCTGAGAACATCTGCTTTCCCTAGTCAACATGTCAAG                         GAGAAATGGTCCAAGAATCTCTACCTTGCATCAGTATGCTATGGACGTACT
genomic: AAACTCAAGAGACGCTGAGAACATCTGCTTTCCCTAGTCAACATGTCAAGgttcgtctgc ... ctcgttccagGAGAAATGGTCCAAGAATCTCTACCTTGCATCAGTATGCTATGGACGTACT
EST: gi|33809170|gb|CF330469.1|CF330469
EST:     AAACTCAAGAGACGCTGAGAACATCTGCTTTCCCTAGTCAACATGTCAAG                         GAGAAATGGTCCAAGAATCTCTACCTTGCATCAGTATGCTATGGACGTACT
genomic: AAACTCAAGAGACGCTGAGAACATCTGCTTTCCCTAGTCAACATGTCAAGgttcgtctgc ... ctcgttccagGAGAAATGGTCCAAGAATCTCTACCTTGCATCAGTATGCTATGGACGTACT
EST: gi|58692454|gb|CK081141.1|CK081141
EST:     AAACTCAAGAGACGCTGAGAACATCTGCTTTCCCTAGTCAACATGTCAAG                         GAGAAATGGTCCAAGAATCTCTACCTTGCATCAGTATGCTATGGACGTACT
genomic: AAACTCAAGAGACGCTGAGAACATCTGCTTTCCCTAGTCAACATGTCAAGgttcgtctgc ... ctcgttccagGAGAAATGGTCCAAGAATCTCTACCTTGCATCAGTATGCTATGGACGTACT
EST: gi|15008647|gb|AU223035.1|AU223035
EST:     AAACTCAAGAGACGCTGAGAACATCTGCTTTCCCTAGTCAACATGTCAAG                         GAGAAATGGTCCAAGAATCTCTACCTTGCATCAGTATGCTATGGACGTACT
genomic: AAACTCAAGAGACGCTGAGAACATCTGCTTTCCCTAGTCAACATGTCAAGgttcgtctgc ... ctcgttccagGAGAAATGGTCCAAGAATCTCTACCTTGCATCAGTATGCTATGGACGTACT
EST: gi|86873814|gb|CI341247.1|CI341247
EST:     AAACTCAAGAGACCCTGAGAACATCTGCTTTCCCTAGTCAACATGTCAAG                         GAGAAATGGTCCAAGAATCTCTACCTTGCATCAGTATGCTATGGACGTACT
genomic: AAACTCAAGAGACGCTGAGAACATCTGCTTTCCCTAGTCAACATGTCAAGgttcgtctgc ... ctcgttccagGAGAAATGGTCCAAGAATCTCTACCTTGCATCAGTATGCTATGGACGTACT
EST: gi|58654345|gb|CK043025.1|CK043025
EST:     AAACTCAAGAGACGCTGAGAACATCTGCTTTCCCTAGTCAACATGTCAAG                         GAGAAATGGTCCAAGAATCTCTACCTTGCACTCAGTATGCTATGGACGTAC
genomic: AAACTCAAGAGACGCTGAGAACATCTGCTTTCCCTAGTCAACATGTCAAGgttcgtctgc ... ctcgttccagGAGAAATGGTCCAAGAATCTCTACCTTGCA-TCAGTATGCTATGGACGTAC
EST: gi|58591468|gb|CF989776.1|CF989776
EST:     AAACTCAAGAGACGCTGAGAACATCTGCTTTCCCTAGTCAACATGTCAAG                         GAGAAATGGTCCAAGAATCTCTACCTTGCATCAGTATGCTATGGACGTACT
genomic: AAACTCAAGAGACGCTGAGAACATCTGCTTTCCCTAGTCAACATGTCAAGgttcgtctgc ... ctcgttccagGAGAAATGGTCCAAGAATCTCTACCTTGCATCAGTATGCTATGGACGTACT
EST: gi|58692206|gb|CK080893.1|CK080893
EST:     AAACTCAAGAGACGCTGAGAACATCTGCTTTCCCTAGTCAACATGTCAAG                         GAGAAATGGTCCAAGAATCTCTACCTTGCATCAGTATGCTATGGACGTACT
genomic: AAACTCAAGAGACGCTGAGAACATCTGCTTTCCCTAGTCAACATGTCAAGgttcgtctgc ... ctcgttccagGAGAAATGGTCCAAGAATCTCTACCTTGCATCAGTATGCTATGGACGTACT
EST: gi|86903041|gb|CI324511.1|CI324511
EST:     AAACTCAAGAGACGCTGAGAACATCTGCTTTCCCTAGTCAACATGTCAAG                         GAGAAATGGTCCAAGAATCTCTACCTTGCATCAGTATGCTATGGACGTACT
genomic: AAACTCAAGAGACGCTGAGAACATCTGCTTTCCCTAGTCAACATGTCAAGgttcgtctgc ... ctcgttccagGAGAAATGGTCCAAGAATCTCTACCTTGCATCAGTATGCTATGGACGTACT
EST: gi|88846551|gb|CI373319.1|CI373319
EST:     AACTCAAGAGACGGCTGAGAACATCTGCTTTCCCTAGTCAACATGTCAAG                         GAGAAATGTTCCAAGAATCTCTACCTTGCATCAGTATGCTATGGACGTACT
genomic: AACTCAAGAGAC-GCTGAGAACATCTGCTTTCCCTAGTCAACATGTCAAGgttcgtctgc ... ctcgttccagGAGAAATGGTCCAAGAATCTCTACCTTGCATCAGTATGCTATGGACGTACT
EST: gi|86860604|gb|CI324894.1|CI324894
EST:     CAAGAGACGCTGAGAACATCTGCTTTCCCTAGTCAACATGTCAAG                         GAGAAATGGTCCAATAATCTCTACCTTGCATCAGTATGCTATGTACGTACT
genomic: CAAGAGACGCTGAGAACATCTGCTTTCCCTAGTCAACATGTCAAGgttcgtctgc ... ctcgttccagGAGAAATGGTCCAAGAATCTCTACCTTGCATCAGTATGCTATGGACGTACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcagtttttgccgttagtactttgctctgacagagtgatgcttgtctcgttccagGAGAAATGGTCCAAGAATCTCTACCTTGCATCAGTATGCTATGGACGTACTGTATCCTAGAAATCTGGCCATCTAGTTGAAGCCATTTCGAGTTCTAGGC
                        ctctgac  putative branch site (score: 3)
                                            tctcgttcc  putative PPT
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttcgtctgcttcatatactagtaacgtacttggcagtttttgccgttagtactttgctctgacagagtgatgcttgtctcgttccagGAGAAATGGTCCAAGAATCTCTACCTTGCATCAGTATGCTATGGACGTACTGTATCCTAGAAATCTGGCCATCTAGTTGAAGCCATTTCGAGTTCTAGGC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGC