1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
gtgattttctattctttatgtgttatctttgtgtttttactgatctctatatagctaaagcacctaaatgtggtttcttgacttaatttgtcaaatagGAACCTGCATGGGTGAAAGCAAATCGTGGGCGATATGTAGCTCAGGCGCAGAATGTCTGCTCCAAACAACTCCTGAGAAGCATTGCAAAACTGGATGCGA
species | Oryza sativa |
transcript | LOC_Os01g51040.1 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: TAATCAAGTTTGGTTTCTCACACTTTGTTCCCGAG GAACCTGCATGGGTGAAAGCAAATCGTGGGCGATATGTAGCTCAGGCGCAGEST: gi|88260480|gb|CI362773.1|CI362773
genomic: TAATCAAGTTTGGTTTCTCACACTTTGTTCCCGAGgtgattttct ... tgtcaaatagGAACCTGCATGGGTGAAAGCAAATCGTGGGCGATATGTAGCTCAGGCGCAG
EST: TTTCTCACACTTTCTTCCCGAG GAACCTGCATGGGTGAAAGCAAATCGTGGGCGATAAGTAGCTCATGCGCAGEST: gi|88485518|gb|CI422789.1|CI422789
genomic: TTTCTCACACTTTGTTCCCGAGgtgattttct ... tgtcaaatagGAACCTGCATGGGTGAAAGCAAATCGTGGGCGATATGTAGCTCAGGCGCAG
EST: AGCATGCTCTCTTCTTAATCAAGTTTGGTTTCTCACACTTTGTTCCCGAG GAACCTGCATGGGTGAAAGCAAATCGTGGGCGATATGTAGCTCAGGCGCAGEST: gi|88260447|gb|CI362740.1|CI362740
genomic: AGCATGCTCTCTTCTTAATCAAGTTTGGTTTCTCACACTTTGTTCCCGAGgtgattttct ... tgtcaaatagGAACCTGCATGGGTGAAAGCAAATCGTGGGCGATATGTAGCTCAGGCGCAG
EST: TTAATCAAGTTTGGTTTCTCACACTTTGTTCCCGAG GAACCTGCATGGGTGAAAGCAAATCGTGGGCGATATGTAGCTCAGGCGCAGEST: gi|88478908|gb|CI416179.1|CI416179
genomic: TTAATCAAGTTTGGTTTCTCACACTTTGTTCCCGAGgtgattttct ... tgtcaaatagGAACCTGCATGGGTGAAAGCAAATCGTGGGCGATATGTAGCTCAGGCGCAG
EST: TCTCTTCTTAATCAAGTTTGGTTTCTCACACTTTGTTCCCGAG GAACCTGCATGGGTGAAAGCAAATCGTGGGCGATATGTAGCTCAGGCGCAGEST: gi|88510777|gb|CI438283.1|CI438283
genomic: TCTCTTCTTAATCAAGTTTGGTTTCTCACACTTTGTTCCCGAGgtgattttct ... tgtcaaatagGAACCTGCATGGGTGAAAGCAAATCGTGGGCGATATGTAGCTCAGGCGCAG
EST: TCTTAATCAAGTTTGGTTTCTCACACTTTGTTCCCGAG GAACCTGCATGGGTGAAAGCAAATCGTGGGCGATATGTAGCTCAGGCGCAGEST: gi|88485887|gb|CI423158.1|CI423158
genomic: TCTTAATCAAGTTTGGTTTCTCACACTTTGTTCCCGAGgtgattttct ... tgtcaaatagGAACCTGCATGGGTGAAAGCAAATCGTGGGCGATATGTAGCTCAGGCGCAG
EST: GTTTCTCACACTTTGTTCCCGAG GAACCTGCATGGGTGAAAGCAAATCGTGGGCGATATGTAGCTCAGGCGCAG
genomic: GTTTCTCACACTTTGTTCCCGAGgtgattttct ... tgtcaaatagGAACCTGCATGGGTGAAAGCAAATCGTGGGCGATATGTAGCTCAGGCGCAG
tctctatatagctaaagcacctaaatgtggtttcttgacttaatttgtcaaatagGAACCTGCATGGGTGAAAGCAAATCGTGGGCGATATGTAGCTCAGGCGCAGAATGTCTGCTCCAAACAACTCCTGAGAAGCATTGCAAAACTGGATGCGA
ttaatttgtcaaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgattttctattctttatgtgttatctttgtgtttttactgatctctatatagctaaagcacctaaatgtggtttcttgacttaatttgtcaaatagGAACCTGCATGGGTGAAAGCAAATCGTGGGCGATATGTAGCTCAGGCGCAGAATGTCTGCTCCAAACAACTCCTGAGAAGCATTGCAAAACTGGATGCGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC