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...acatatgttaatggagggagtatatcaattattgtgtgtggatatttatctcatttggaacaagtcatcattatttttaattactctgtacatttctcagGTTGTTCGGTTAGCCTCCTTTCAGTATGCTCCATCTATACCCCCATTTATAGTGCCAAAGCAATCAAAGTTAGATGGAGAAGATTCAGTGTTTCAGAAAG
species | Oryza sativa |
transcript | LOC_Os01g46510.1 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: CCAAGACTACCACTTCTGAGAAAATAGCTTTAAGACCTCCAATGTTGCAG GTTGTTCGGTTAGCCTCCTTTCAGTATGCTCCATCTATACCCCCATTTATAEST: gi|58666107|gb|CK054793.1|CK054793
genomic: CCAAGACTACCACTTCTGAGAAAATAGCTTTAAGACCTCCAATGTTGCAGgtacagtttt ... catttctcagGTTGTTCGGTTAGCCTCCTTTCAGTATGCTCCATCTATACCCCCATTTATA
EST: CCAAGACTACCACTTCTGAGAAAATAGCTTTAAGACCTCCAATGTTGCAG GTTGTTCGGTTAGCCTCCTTTCAGTATGCTCCATCTATACCCCCATTTATAEST: gi|88585007|gb|CI702607.1|CI702607
genomic: CCAAGACTACCACTTCTGAGAAAATAGCTTTAAGACCTCCAATGTTGCAGgtacagtttt ... catttctcagGTTGTTCGGTTAGCCTCCTTTCAGTATGCTCCATCTATACCCCCATTTATA
EST: CCAAGACTACCACTTCTGAGAAAATAGCTTTAAGACCTCCAATGTTGCAG GTTGTTCGGTTAGCCTCCTTTCAGTATGCTCCATCTATACCCCCATTTATAEST: gi|58665271|gb|CK053957.1|CK053957
genomic: CCAAGACTACCACTTCTGAGAAAATAGCTTTAAGACCTCCAATGTTGCAGgtacagtttt ... catttctcagGTTGTTCGGTTAGCCTCCTTTCAGTATGCTCCATCTATACCCCCATTTATA
EST: CCAAGACTACCACTTCTGAGAAAATAGCTTTAAGACCTCCAATGTTGCAG GTTGTTCGGTTAGCCTCCTTTCAGTATGCTCCATCTATACCCCCATTTATAEST: gi|58587152|gb|CF985460.1|CF985460
genomic: CCAAGACTACCACTTCTGAGAAAATAGCTTTAAGACCTCCAATGTTGCAGgtacagtttt ... catttctcagGTTGTTCGGTTAGCCTCCTTTCAGTATGCTCCATCTATACCCCCATTTATA
EST: CCAAGACTACCACTTCTGAGAAAATAGCTTTAAGACCTCCAATGTTGCAG GTTGTTCGGTTAGCCTCCTTTCAGTATGCTCCATCTATACCCCCATTTATAEST: gi|88852155|gb|CI683673.1|CI683673
genomic: CCAAGACTACCACTTCTGAGAAAATAGCTTTAAGACCTCCAATGTTGCAGgtacagtttt ... catttctcagGTTGTTCGGTTAGCCTCCTTTCAGTATGCTCCATCTATACCCCCATTTATA
EST: CCAAGACTACCACTTCTGAGAAAATAGCTTTAAGACCTCCAATGTTGCAG GTTGTTCGGTTAGCCTCCTTTCAGTATGCTCCATCTATACCCCCATTTATAEST: gi|58612142|gb|CK039854.1|CK039854
genomic: CCAAGACTACCACTTCTGAGAAAATAGCTTTAAGACCTCCAATGTTGCAGgtacagtttt ... catttctcagGTTGTTCGGTTAGCCTCCTTTCAGTATGCTCCATCTATACCCCCATTTATA
EST: CCAAGACTACCACTTCTGAGAAAATAGCTTTAAGACCTCCAATGTTGCAG GTTGTTCGGTTAGCCTCCTTTCAGTATGCTCCATCTATACCCCCATTTATAEST: gi|58662716|gb|CK051402.1|CK051402
genomic: CCAAGACTACCACTTCTGAGAAAATAGCTTTAAGACCTCCAATGTTGCAGgtacagtttt ... catttctcagGTTGTTCGGTTAGCCTCCTTTCAGTATGCTCCATCTATACCCCCATTTATA
EST: CCAAGACTACCACTTCTGAGAAAATAGCTTTAAGACCTCCAATGTTGCAG GTTGTTCGGTTAGCCTCCTTTCAGTATGCTCCATCTATACCCCCATTTATAEST: gi|58669479|gb|CK058165.1|CK058165
genomic: CCAAGACTACCACTTCTGAGAAAATAGCTTTAAGACCTCCAATGTTGCAGgtacagtttt ... catttctcagGTTGTTCGGTTAGCCTCCTTTCAGTATGCTCCATCTATACCCCCATTTATA
EST: CCAAGACTACCACTTCTGAGAAAATAGCTTTAAGACCTCCAATGTTGCAG GTTGTTCGGTTAGCCTCCTTTCAGTATGCTCCATCTATACCCCCATTTATA
genomic: CCAAGACTACCACTTCTGAGAAAATAGCTTTAAGACCTCCAATGTTGCAGgtacagtttt ... catttctcagGTTGTTCGGTTAGCCTCCTTTCAGTATGCTCCATCTATACCCCCATTTATA
ttatctcatttggaacaagtcatcattatttttaattactctgtacatttctcagGTTGTTCGGTTAGCCTCCTTTCAGTATGCTCCATCTATACCCCCATTTATAGTGCCAAAGCAATCAAAGTTAGATGGAGAAGATTCAGTGTTTCAGAAAG
ttttaat putative branch site (score: 20)
catttctc putative PPT
aagtcatcattatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acatatgttaatggagggagtatatcaattattgtgtgtggatatttatctcatttggaacaagtcatcattatttttaattactctgtacatttctcagGTTGTTCGGTTAGCCTCCTTTCAGTATGCTCCATCTATACCCCCATTTATAGTGCCAAAGCAATCAAAGTTAGATGGAGAAGATTCAGTGTTTCAGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA