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gtatgcaatgcaacttcatgtgtttcatggtatcttctgctttaacattcaacttctgatgcttgtctctgtttccaatcatttttgtcccaacagGGAGGTGCTACTCAGATGCGATTTCAACCTCAAAAGGGAAAATATCTTGCAGCTGCCTCAGAGAAGGCCATCTACATACTTGATGGAGAGACACAACTTG
species | Oryza sativa |
transcript | LOC_Os01g42260.3 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: GCTGGAGCATAAATAATGGTAGCTGCCTGACCTTTGTTAAGGTCTTTAAG GGAGGTGCTACTCAGATGCGATTTCAACNTCAAAAGGGAAAATATCTTGCAEST: gi|38478243|gb|CF962376.1|CF962376
genomic: GCTGGAGCATAAATAATGGTAGCTGCCTGACCTTTGTTAAGGTCTTTAAGgtatgcaatg ... gtcccaacagGGAGGTGCTACTCAGATGCGATTTCAACCTCAAAAGGGAAAATATCTTGCA
EST: GCTGGAGCATAAATAATGGTGGCTGCCTGACCTTTGTTAAGGTCTTTAAG GGAGGTGCTACTCAGATGCGATTTCAACCTCAAAAGGGAAAATATCTTGCAEST: gi|33690021|gb|CF318260.1|CF318260
genomic: GCTGGAGCATAAATAATGGTAGCTGCCTGACCTTTGTTAAGGTCTTTAAGgtatgcaatg ... gtcccaacagGGAGGTGCTACTCAGATGCGATTTCAACCTCAAAAGGGAAAATATCTTGCA
EST: GCTGGAGCATAAATAATGGTAGCTGCCTGACCTTTGTTAAGGTCTTTAAG GGAGGTGCTACTCAGATGCGATTTCAACCTCAAAAGGAAAAATATCTTGCAEST: gi|58608277|gb|CK036310.1|CK036310
genomic: GCTGGAGCATAAATAATGGTAGCTGCCTGACCTTTGTTAAGGTCTTTAAGgtatgcaatg ... gtcccaacagGGAGGTGCTACTCAGATGCGATTTCAACCTCAAAAGGGAAAATATCTTGCA
EST: GCTGGAGCATAAATAATGGTAGCTGCCTGACCTTTGTTAAGGTCTTTAAG GGAGGTGCTACTCAGATGCGATTTCAACCTCAAAAGGGAAAATATCTTGCAEST: gi|58682276|gb|CK070963.1|CK070963
genomic: GCTGGAGCATAAATAATGGTAGCTGCCTGACCTTTGTTAAGGTCTTTAAGgtatgcaatg ... gtcccaacagGGAGGTGCTACTCAGATGCGATTTCAACCTCAAAAGGGAAAATATCTTGCA
EST: GCTGGAGCATAAATAATGGTAGCTGCCTGACCTTTGTTAAGGTCTTTAAG GGAGGTGCTACTCAGATGCGATTTCAACCTCAAAAGGGAAAATATCTTGCAEST: gi|58604540|gb|CK015068.1|CK015068
genomic: GCTGGAGCATAAATAATGGTAGCTGCCTGACCTTTGTTAAGGTCTTTAAGgtatgcaatg ... gtcccaacagGGAGGTGCTACTCAGATGCGATTTCAACCTCAAAAGGGAAAATATCTTGCA
EST: GCTGGAGCATAAATAATGGTAGCTGCCTGACCTTTGTTAAGGTCTTTAAG GGAGGTGCTACTCAGATGCGATTTCAACCTCAAAAGGGAAAATATCTTGCAEST: gi|218488081|gb|FG946110.1|FG946110
genomic: GCTGGAGCATAAATAATGGTAGCTGCCTGACCTTTGTTAAGGTCTTTAAGgtatgcaatg ... gtcccaacagGGAGGTGCTACTCAGATGCGATTTCAACCTCAAAAGGGAAAATATCTTGCA
EST: GCTGGAGCATAAATAATGGTAGCTGCCTGACCTTTGTTAAGGTCTTTAAG GGAGGTGCTACTCAGATGCGATTTCAACCTCAAAAGGGAAAATATCTTGCAEST: gi|3107649|gb|D43389.1|D43389
genomic: GCTGGAGCATAAATAATGGTAGCTGCCTGACCTTTGTTAAGGTCTTTAAGgtatgcaatg ... gtcccaacagGGAGGTGCTACTCAGATGCGATTTCAACCTCAAAAGGGAAAATATCTTGCA
EST: GCTGGNGCATAAATAATGGTAGCTGCCTGACCTTTGTTAAGGTCTTTAAG GGGAGGT-CTACTCAGATGCGATTT
genomic: GCTGGAGCATAAATAATGGTAGCTGCCTGACCTTTGTTAAGGTCTTTAAGgtatgcaatg ... gtcccaacagGG-AGGTGCTACTCAGATGCGATTT
ttaacattcaacttctgatgcttgtctctgtttccaatcatttttgtcccaacagGGAGGTGCTACTCAGATGCGATTTCAACCTCAAAAGGGAAAATATCTTGCAGCTGCCTCAGAGAAGGCCATCTACATACTTGATGGAGAGACACAACTTG
ttctgat putative branch site (score: 3)
tttttgtccc putative PPT
aatcattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgcaatgcaacttcatgtgtttcatggtatcttctgctttaacattcaacttctgatgcttgtctctgtttccaatcatttttgtcccaacagGGAGGTGCTACTCAGATGCGATTTCAACCTCAAAAGGGAAAATATCTTGCAGCTGCCTCAGAGAAGGCCATCTACATACTTGATGGAGAGACACAACTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA