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...aaagaacagaatgttgcatgcggataatatagtgtctagaaccatatttgttgaagctgtacttttgagtgagtggatttccattgttttctcctttcagGATGTCTATTTTGATGATGAATCAGCAGAGGTCGTAATATCTTCACTGCGACTGGGAGATGATCAGGATGGGTAATTTGTGATCTTAAAACATACTTTGG
species | Oryza sativa |
transcript | LOC_Os01g40340.3 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: AGAATCAAGGGACACTTGAACGGGATGATGAG GATGTCTATTTTGATGATGAATCAGCAGAGGTCGTAATATCTTCACTGCGAEST: gi|29666102|gb|CB662377.1|CB662377
genomic: AGAATCAAGGGACACTTGAACGGGATGATGAGgtatatttaa ... ctcctttcagGATGTCTATTTTGATGATGAATCAGCAGAGGTCGTAATATCTTCACTGCGA
EST: AGAATCAAGGGACACTTGAACGGGATGATGAG GATGTCTATTTTGATGATGAATCAGCAGAGGTCGTAATATCTTCACTGCGAEST: gi|58679221|gb|CK067908.1|CK067908
genomic: AGAATCAAGGGACACTTGAACGGGATGATGAGgtatatttaa ... ctcctttcagGATGTCTATTTTGATGATGAATCAGCAGAGGTCGTAATATCTTCACTGCGA
EST: AATCAAGGGACACTTGAACGGGATGATGAG GATGTCTATTTTGATGATGAATCAGCAGAGGTCGTAATATCTTCACTGCGAEST: gi|29680806|gb|CB677081.1|CB677081
genomic: AATCAAGGGACACTTGAACGGGATGATGAGgtatatttaa ... ctcctttcagGATGTCTATTTTGATGATGAATCAGCAGAGGTCGTAATATCTTCACTGCGA
EST: AATCAAGGGACACTTGAACGGGATGATGAG GATGTCTATTTTGATGATGAATCAGCAGAGGTCGTAATATCTTCACTGCGA
genomic: AATCAAGGGACACTTGAACGGGATGATGAGgtatatttaa ... ctcctttcagGATGTCTATTTTGATGATGAATCAGCAGAGGTCGTAATATCTTCACTGCGA
atttgttgaagctgtacttttgagtgagtggatttccattgttttctcctttcagGATGTCTATTTTGATGATGAATCAGCAGAGGTCGTAATATCTTCACTGCGACTGGGAGATGATCAGGATGGGTAATTTGTGATCTTAAAACATACTTTGG
tttccattgttttctc CT-rich tract
attgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaagaacagaatgttgcatgcggataatatagtgtctagaaccatatttgttgaagctgtacttttgagtgagtggatttccattgttttctcctttcagGATGTCTATTTTGATGATGAATCAGCAGAGGTCGTAATATCTTCACTGCGACTGGGAGATGATCAGGATGGGTAATTTGTGATCTTAAAACATACTTTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG