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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aatctttgatatttgctttttgtttataatgcctatgccagaactacagaattataatacctttgtaagctaagcaagcattttttttttgcctgttaagATGGGGTTGGCTATCACGTACGGGCCTATGGGATAAGAGTCATCTGACGAGGCAAATTGAAAA

Basic information

species Oryza sativa
transcript LOC_Os01g14810.2
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g14810.2 (Oryza sativa), 3'ss of exon 15
lower sequence: GRMZM2G044819_T02 (Zea mays), 3'ss of exon 13
aatctttgatatttgctttttgtttataatgcctatgccag--aactacagaattataatacctttgtaagctaagcaagcat--tttttttttgcctgttaagATGGGGTTGGCTATCACGTACGGGCCTATGGGATAAGAGTCATCTGACGAGGCAAATTGAAAA
  | |     ||||  |  ||||| ||||    | ||  |   | ||    |||| | | |     |||||||||||||| ||  ||||  ||| ||| ||||||||||||||| | |||||| | || |||||||||||||||||||| || ||||||||||||||
--tgtaatccatttattagttgttcataagttttctggtatttatctctttaattgtcagaaaa--gtaagctaagcaagtatgcttttccttttcctcttaagATGGGGTTGGTTGTCACGTGCTGGTCTATGGGATAAGAGTCATCTTACCAGGCAAATTGAAAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86886647|gb|CI312532.1|CI312532
EST:     TTCAGACCTCTCATTCAGAAAG                         ATGGGGTTGGCTATCACGTACGGGCCTATGGGATAAGAGTCATCTGACGAG
genomic: TTCAGACCTCTCATTCAGAAAGgtttgtgaat ... gcctgttaagATGGGGTTGGCTATCACGTACGGGCCTATGGGATAAGAGTCATCTGACGAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acagaattataatacctttgtaagctaagcaagcattttttttttgcctgttaagATGGGGTTGGCTATCACGTACGGGCCTATGGGATAAGAGTCATCTGACGAGGCAAATTGAAAA
                                   ttttttttttgcctgt  CT-rich tract
                              aagcatttttttttt  TA-rich tract