Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgtggcaaattcttaaaatccttttcattcttttctgcatagtgtcttttttctcgctaatttataaatttcttcgctcattgaaatttggttttctttagtggagGCCTGGAGAGGGCGTGCCGACTTACGAAGTGAAAGATGTCGACGAAACACGGCGCATGAGCATCTCAGTAGCAGAAAGCTTTGCTTGTATAACTGTAACA

Basic information

species Oryza sativa
transcript LOC_Os01g10280.4
intron # 15
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89188813|gb|CI048549.1|CI048549
EST:     AATTGACATTCTTTTTGATCCAGTGTTGACATAAGCAGATATGGTCCATG                         T
genomic: AATTGACATTCTTTTTGATCCAGTGTTGACATAAGCAGATATGGTCCATGgttgtggcaa ... tttagtggag-
EST: gi|89188813|gb|CI048549.1|CI048549
EST:     AATTGACATTCTTTTTGATCCAGTGTTGACATAAGCAGATATGGTCCATG                         T
genomic: AATTGACATTCTTTTTGATCCAGTGTTGACATAAGCAGATATGGTCCATGgttgtggcaa ... tttagtggag-


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctcgctaatttataaatttcttcgctcattgaaatttggttttctttagtggagGCCTGGAGAGGGCGTGCCGACTTACGAAGTGAAAGATGTCGACGAAACACGGCGCATGAGCATCTCAGTAGCAGAAAGCTTTGCTTGTATAACTGTAACA
   cgctaat  putative branch site (score: 3)
                                        ttttcttt  putative PPT
      taatttataaatttct  TA-rich tract