Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgactataccttcttcttgtgccttgtttgaactccacataacaaataaatctgataaatctatttgcagGAAAAATGGGCAAAAAATCTTTATTTAGGCTCCATATGCTATGGAAGATCAGTGTCGTGAAGTGCATTTTCCCGAGCTGGTCCTTTGTAAGATTAAGATC

Basic information

species Oryza sativa
transcript LOC_Os01g10150.1
intron # 15
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89180204|gb|CI044483.1|CI044483
EST:     AAACACAGGAGACACTGAGAACATCTGCTTTTCCTGGCCAGCATGTAAAG                         GAAAAATGGGCAAAAAATCTTTATTTAGGCTCCATATGCTATGGAAGATCA
genomic: AAACACAGGAGACACTGAGAACATCTGCTTTTCCTGGCCAGCATGTAAAGgtgactatac ... ctatttgcagGAAAAATGGGCAAAAAATCTTTATTTAGGCTCCATATGCTATGGAAGATCA
EST: gi|87040610|gb|CI195232.1|CI195232
EST:     AAACACAGGAGACACTGAGAACATCTGCTTTTCCTGGCCAGCATGTAAAG                         GAAAAATGGGCAAAAAATCTTTATTTAGGCTCCATATGCTATGGAAGATCA
genomic: AAACACAGGAGACACTGAGAACATCTGCTTTTCCTGGCCAGCATGTAAAGgtgactatac ... ctatttgcagGAAAAATGGGCAAAAAATCTTTATTTAGGCTCCATATGCTATGGAAGATCA
EST: gi|396941388|gb|HO188597.1|HO188597
EST:     AAACACAGGAGACACTGAGAACATCTGCTTTTCCTGGCCAGCATGTAAAG                         GAAAAATGGGCAAAAAATCTTTATTTAGGCTCCATATGCTATGGAAGATCA
genomic: AAACACAGGAGACACTGAGAACATCTGCTTTTCCTGGCCAGCATGTAAAGgtgactatac ... ctatttgcagGAAAAATGGGCAAAAAATCTTTATTTAGGCTCCATATGCTATGGAAGATCA
EST: gi|29645032|gb|CB650039.1|CB650039
EST:     AAACACAGGAGACACTGAGAACATCTGCTTTTCCTGGCCAGCATGTAAAG                         GAAAAATGGGCAAAAAATCTTTATTTAGGCTCCATATGCTATGGAAGATCA
genomic: AAACACAGGAGACACTGAGAACATCTGCTTTTCCTGGCCAGCATGTAAAGgtgactatac ... ctatttgcagGAAAAATGGGCAAAAAATCTTTATTTAGGCTCCATATGCTATGGAAGATCA
EST: gi|88263532|gb|CI367306.1|CI367306
EST:     AAACACAGGAGACACTGAGAACATCTGCTTTTCCTGGCCAGCATGTAAAG                         GAAAAATGGGCAAAAAATCTTTATTTAGGCTCCATATGCTATGGAAGATCA
genomic: AAACACAGGAGACACTGAGAACATCTGCTTTTCCTGGCCAGCATGTAAAGgtgactatac ... ctatttgcagGAAAAATGGGCAAAAAATCTTTATTTAGGCTCCATATGCTATGGAAGATCA
EST: gi|88294949|gb|CI522903.1|CI522903
EST:     AAACACAGGAGACACTGAGAACATCTGCTTTTCCTGGCCAGCATGTAAAG                         GAAAAATGGCCAAAAAATCTTTATTTAGGCTCCATATGCTATGGAAGATCA
genomic: AAACACAGGAGACACTGAGAACATCTGCTTTTCCTGGCCAGCATGTAAAGgtgactatac ... ctatttgcagGAAAAATGGGCAAAAAATCTTTATTTAGGCTCCATATGCTATGGAAGATCA
EST: gi|86486164|gb|CI128797.1|CI128797
EST:     AAACACCGGAGACACTGAGAACATCTGCTTTTCCTGGCCAGCATGTAAAG                         GAAAAATGGGCCAAAAAATCTTTATTTAGGCTCCATATGCTATGGAAGATC
genomic: AAACACAGGAGACACTGAGAACATCTGCTTTTCCTGGCCAGCATGTAAAGgtgactatac ... ctatttgcagGAAAAATGGGC-AAAAAATCTTTATTTAGGCTCCATATGCTATGGAAGATC
EST: gi|89184391|gb|CI046956.1|CI046956
EST:     AAACACAGGAGACACTGAGAACATCTGCTTTTCCTGGCCAGCATGTAAAG                         GAAAAATGGGCAAAAAATCTTTATTTAGGCTCCATATGCTATGGAAGATCA
genomic: AAACACAGGAGACACTGAGAACATCTGCTTTTCCTGGCCAGCATGTAAAGgtgactatac ... ctatttgcagGAAAAATGGGCAAAAAATCTTTATTTAGGCTCCATATGCTATGGAAGATCA
EST: gi|89166036|gb|CI103126.1|CI103126
EST:     AAACACAGGAGACACTGAGAACATCTGCTTTTCCTGGCCAGCATGTAAAG                         GAAAAATGGGCAAAAAATCTTTATTTAGGCTCCATATGCTATGGAAGATCA
genomic: AAACACAGGAGACACTGAGAACATCTGCTTTTCCTGGCCAGCATGTAAAGgtgactatac ... ctatttgcagGAAAAATGGGCAAAAAATCTTTATTTAGGCTCCATATGCTATGGAAGATCA
EST: gi|88437775|gb|CI533732.1|CI533732
EST:     AAACACAGGAGACACTGAGAACATCTGCTTTTCCTGGCCAGCATGTAAAG                         GAAAAATGGGCAAAAAATCTTTATTTAGGCTCCATATGCTATGGAAGATCA
genomic: AAACACAGGAGACACTGAGAACATCTGCTTTTCCTGGCCAGCATGTAAAGgtgactatac ... ctatttgcagGAAAAATGGGCAAAAAATCTTTATTTAGGCTCCATATGCTATGGAAGATCA
EST: gi|87024182|gb|CI256923.1|CI256923
EST:     AAACACAGGAGACACTGAGAACATCTGCTTTTCCTGGCCAGCATGTAAAG                         GAAAAATGGGCAAAAAATCTTTATTTAGGCTCCATATGCTATGGAAGATCA
genomic: AAACACAGGAGACACTGAGAACATCTGCTTTTCCTGGCCAGCATGTAAAGgtgactatac ... ctatttgcagGAAAAATGGGCAAAAAATCTTTATTTAGGCTCCATATGCTATGGAAGATCA
EST: gi|29632066|gb|CB637075.1|CB637075
EST:     AAACACAGGAGACACTGAGAACATCTGCTTTTCCTGGCCAGCATGTAAAG                         GAAAAATGGGCAAAAAATCTTTATTTAGGCTCCATATGCTATGGAAGATCA
genomic: AAACACAGGAGACACTGAGAACATCTGCTTTTCCTGGCCAGCATGTAAAGgtgactatac ... ctatttgcagGAAAAATGGGCAAAAAATCTTTATTTAGGCTCCATATGCTATGGAAGATCA
EST: gi|86526996|gb|CI167202.1|CI167202
EST:     AAACACAGGAGACACTGAGAACATCTGCTTTTCCTGGCCAGCATGTAAAG                         GAAAAATGGGCAAAAAATCTTTATTTAGGCTCCATATGCTATGGAAGATCA
genomic: AAACACAGGAGACACTGAGAACATCTGCTTTTCCTGGCCAGCATGTAAAGgtgactatac ... ctatttgcagGAAAAATGGGCAAAAAATCTTTATTTAGGCTCCATATGCTATGGAAGATCA
EST: gi|88264867|gb|CI367518.1|CI367518
EST:     AAACACAGGAGACACTGAGAACATCTGCTTTTCCTGGCCAGCATGTAAAG                         GAAAAATGGGCAAAAAATCTTTATTTAGGCTCCATATGCTATGGAAGATCA
genomic: AAACACAGGAGACACTGAGAACATCTGCTTTTCCTGGCCAGCATGTAAAGgtgactatac ... ctatttgcagGAAAAATGGGCAAAAAATCTTTATTTAGGCTCCATATGCTATGGAAGATCA
EST: gi|89186773|gb|CI052186.1|CI052186
EST:     AAACACAGGAGACACTGAGAACATCTGCTTTTCCTGGCCAGCATGTAAAG                         GAAAAATGGGCAAAAAATCTTTATTTAGGCTCCATATGCTATGGAAGATCA
genomic: AAACACAGGAGACACTGAGAACATCTGCTTTTCCTGGCCAGCATGTAAAGgtgactatac ... ctatttgcagGAAAAATGGGCAAAAAATCTTTATTTAGGCTCCATATGCTATGGAAGATCA
EST: gi|27546382|gb|CA764550.2|CA764550
EST:     AAACACAGGAGACACTGAGAACATCTGCTTTTCCTGGCCAGCATGTAAAG                         GAAAAATGGGCAAAAAATCTTTATTTAGGCTCCATATGCTATGGAAGATCA
genomic: AAACACAGGAGACACTGAGAACATCTGCTTTTCCTGGCCAGCATGTAAAGgtgactatac ... ctatttgcagGAAAAATGGGCAAAAAATCTTTATTTAGGCTCCATATGCTATGGAAGATCA
EST: gi|29688779|gb|CB685054.1|CB685054
EST:     AAACACAGGAGACACTGAGAACATCTGCTTTTCCTGGCCAGCATGTAAAG                         GAAAAATGGGCAAAAAATCTTTATTTAGGCTCCATATGCTATGGAAGATCA
genomic: AAACACAGGAGACACTGAGAACATCTGCTTTTCCTGGCCAGCATGTAAAGgtgactatac ... ctatttgcagGAAAAATGGGCAAAAAATCTTTATTTAGGCTCCATATGCTATGGAAGATCA
EST: gi|29626995|gb|CB632006.1|CB632006
EST:     AAACACAGGAGACACTGAGAACATCTGCTTTTCCTGGCCAGCATGTAAAG                         GAAAAATGGGCAAAAAATCTTTATTTAGGCTCCATATGCTATGGAAGATCA
genomic: AAACACAGGAGACACTGAGAACATCTGCTTTTCCTGGCCAGCATGTAAAGgtgactatac ... ctatttgcagGAAAAATGGGCAAAAAATCTTTATTTAGGCTCCATATGCTATGGAAGATCA
EST: gi|86600035|gb|CI258375.1|CI258375
EST:     AAACACAGGAGACACTGAGAACATCTGCTTTTCCTGGCCAGCATGTAAAG                         GAAAAATGGGCAAAAAATCTTTATTTAGGCTCCATATGCTATGGAAGATCA
genomic: AAACACAGGAGACACTGAGAACATCTGCTTTTCCTGGCCAGCATGTAAAGgtgactatac ... ctatttgcagGAAAAATGGGCAAAAAATCTTTATTTAGGCTCCATATGCTATGGAAGATCA
EST: gi|29670786|gb|CB667061.1|CB667061
EST:     AAACACAGGAGACACTGAGAACATCTGCTTTTCCTGGCCAGCATGTAAAG                         GAAAAATGGGCAAAAAATCTTTATTTAGGCTCCATATGCTATGGAAGATCA
genomic: AAACACAGGAGACACTGAGAACATCTGCTTTTCCTGGCCAGCATGTAAAGgtgactatac ... ctatttgcagGAAAAATGGGCAAAAAATCTTTATTTAGGCTCCATATGCTATGGAAGATCA
EST: gi|89193060|gb|CI050358.1|CI050358
EST:     AAACACAGGAGACACTGAGAACATCTGCTTTTCCTGGCCAGCATGTAAAG                         GAAAAATGGGCAAAAAATCTTTATTTAGGCTCCATATGCTATGGAAGATCA
genomic: AAACACAGGAGACACTGAGAACATCTGCTTTTCCTGGCCAGCATGTAAAGgtgactatac ... ctatttgcagGAAAAATGGGCAAAAAATCTTTATTTAGGCTCCATATGCTATGGAAGATCA
EST: gi|88291104|gb|CI527494.1|CI527494
EST:     AAACACAGGAGACACTGAGAACATCTGCTTTTCCTGGCCAGCATGTAAAG                         GAAAAATGGGCAAAAAATCTTTATTTAGGCTCCATATGCTATGGAAGATCA
genomic: AAACACAGGAGACACTGAGAACATCTGCTTTTCCTGGCCAGCATGTAAAGgtgactatac ... ctatttgcagGAAAAATGGGCAAAAAATCTTTATTTAGGCTCCATATGCTATGGAAGATCA
EST: gi|89195193|gb|CI051306.1|CI051306
EST:     AAACACAGGAGACACTGAGAACATCTGCTTTTCCTGGCCAGCATGTAAAG                         GAAAAATGGGCAAAAAATCTTTATTTAGGCTCCATATGCTATGGAAGATCA
genomic: AAACACAGGAGACACTGAGAACATCTGCTTTTCCTGGCCAGCATGTAAAGgtgactatac ... ctatttgcagGAAAAATGGGCAAAAAATCTTTATTTAGGCTCCATATGCTATGGAAGATCA
EST: gi|89192726|gb|CI050024.1|CI050024
EST:     AAACACAGGAGACACTGAGAACATCTGCTTTTCCTGGCCAGCATGTAAAG                         GAAAAATGGGCAAAAAATCTTTATTTAGGCTCCATATGCTATGGAAGATCA
genomic: AAACACAGGAGACACTGAGAACATCTGCTTTTCCTGGCCAGCATGTAAAGgtgactatac ... ctatttgcagGAAAAATGGGCAAAAAATCTTTATTTAGGCTCCATATGCTATGGAAGATCA
EST: gi|86483807|gb|CI126440.1|CI126440
EST:     AAACACAGGAGACACTGAGAACATCTGCTTTTCCTGGCCAGCATGTAAAG                         GAAAAATGGGCAAAAAATCTTTATTTAGGCTCCATATGCTATGGAAGATCA
genomic: AAACACAGGAGACACTGAGAACATCTGCTTTTCCTGGCCAGCATGTAAAGgtgactatac ... ctatttgcagGAAAAATGGGCAAAAAATCTTTATTTAGGCTCCATATGCTATGGAAGATCA
EST: gi|88849770|gb|CI001476.1|CI001476
EST:     AAACACAGGAGACACTGAGAACATCTGCTTTTCCTGGCCAGCATGTAAAG                         GAAAAATGGGCAAAAAATCTTTATTTAGGCTCCATATGCTATGGAAGATCA
genomic: AAACACAGGAGACACTGAGAACATCTGCTTTTCCTGGCCAGCATGTAAAGgtgactatac ... ctatttgcagGAAAAATGGGCAAAAAATCTTTATTTAGGCTCCATATGCTATGGAAGATCA
EST: gi|88513442|gb|CI440948.1|CI440948
EST:     AAACACAGGAGACACTGAGAACATCTGCTTTTCCTGGCCAGCATGTAAAG                         GAAAAATGGGCAAAAAATCTTTATTTAGGCTCCATATGCTATGGAAGATCA
genomic: AAACACAGGAGACACTGAGAACATCTGCTTTTCCTGGCCAGCATGTAAAGgtgactatac ... ctatttgcagGAAAAATGGGCAAAAAATCTTTATTTAGGCTCCATATGCTATGGAAGATCA
EST: gi|86483022|gb|CI125655.1|CI125655
EST:     AAACACAGGAGACACTGAGAACATCTGCTTTTCCTGGCCAGCATGTAAAG                         GAAAAATGGGCAAAAAATCTTTATTTAGGCTCCATATGCTATGGAAGATCA
genomic: AAACACAGGAGACACTGAGAACATCTGCTTTTCCTGGCCAGCATGTAAAGgtgactatac ... ctatttgcagGAAAAATGGGCAAAAAATCTTTATTTAGGCTCCATATGCTATGGAAGATCA
EST: gi|58611769|gb|CK039481.1|CK039481
EST:     AAACACAGGAGACACTGAGAACATCTGCTTTTCCTGGCCAGCATGTAAAG                         GAAAAATGGGCAAAAAATCTTTATTTAGGCTCCATATGCTATGGAAGATCA
genomic: AAACACAGGAGACACTGAGAACATCTGCTTTTCCTGGCCAGCATGTAAAGgtgactatac ... ctatttgcagGAAAAATGGGCAAAAAATCTTTATTTAGGCTCCATATGCTATGGAAGATCA
EST: gi|89179002|gb|CI043507.1|CI043507
EST:     AAACACAGGAGACACTGAGAACATCTGCTTTTCCTGGCCAGCATGTAAAG                         GAAAAATGGGCAAAAAATCTTTATTTAGGCTCCATATGCTATGGAAGATCA
genomic: AAACACAGGAGACACTGAGAACATCTGCTTTTCCTGGCCAGCATGTAAAGgtgactatac ... ctatttgcagGAAAAATGGGCAAAAAATCTTTATTTAGGCTCCATATGCTATGGAAGATCA
EST: gi|3766584|gb|AU030694.1|AU030694
EST:     AAACACAGGAGACACTGAGAACATCTGCTTTTCCTGGCCAGCATGTAAAG                         GAAAAATGGGCAAAAAATCTTTATTTAGGCTCCATATGCTATGGAAGATCA
genomic: AAACACAGGAGACACTGAGAACATCTGCTTTTCCTGGCCAGCATGTAAAGgtgactatac ... ctatttgcagGAAAAATGGGCAAAAAATCTTTATTTAGGCTCCATATGCTATGGAAGATCA
EST: gi|89180610|gb|CI044889.1|CI044889
EST:     AAACACAGGAGACACTGAGAACATCTGCTTTTCCTGGCCAGCATGTAAAG                         GAAAAATGGGCAAAAAATCTTTATTTAGGCTCCATATGCTATGGAAGATCA
genomic: AAACACAGGAGACACTGAGAACATCTGCTTTTCCTGGCCAGCATGTAAAGgtgactatac ... ctatttgcagGAAAAATGGGCAAAAAATCTTTATTTAGGCTCCATATGCTATGGAAGATCA
EST: gi|86864077|gb|CI332966.1|CI332966
EST:     AAACACAGGAGACACTGAGAACATCTGCTTTTCCTGGCCAGCATGTAAAG                         GAAAAATGGGCAAAAAATCTTTATTTAGGCTCCATATGCTATGGAAGATCA
genomic: AAACACAGGAGACACTGAGAACATCTGCTTTTCCTGGCCAGCATGTAAAGgtgactatac ... ctatttgcagGAAAAATGGGCAAAAAATCTTTATTTAGGCTCCATATGCTATGGAAGATCA
EST: gi|86852920|gb|CI323229.1|CI323229
EST:     AAACACAGGAGACACTGAGAACATCGGCTTTTCCTGGCCAGCAGGTAAAG                         GAAAAATGGGCAAAAAATCTTTATTTAGGCTCCATATGCTATGGAAGATCA
genomic: AAACACAGGAGACACTGAGAACATCTGCTTTTCCTGGCCAGCATGTAAAGgtgactatac ... ctatttgcagGAAAAATGGGCAAAAAATCTTTATTTAGGCTCCATATGCTATGGAAGATCA
EST: gi|88271617|gb|CI387670.1|CI387670
EST:     AAACACAGGAGACACTGAGAACATCTGCTTTTCCTGGCCAGCATGTAAAG                         GAAAAATGGGCAAAAAATCTTTATTTAGGCTCCATATGCTATGGAAGATCA
genomic: AAACACAGGAGACACTGAGAACATCTGCTTTTCCTGGCCAGCATGTAAAGgtgactatac ... ctatttgcagGAAAAATGGGCAAAAAATCTTTATTTAGGCTCCATATGCTATGGAAGATCA
EST: gi|88514991|gb|CI442645.1|CI442645
EST:     AAACACAGGAGACACTGAGAACATCTGCTTTTCCTGGCCAGCATGTAAAG                         GAAAAATGGGCAAAAAATCTTTATTTAGGCTCCATATGCTATGGAAGATCA
genomic: AAACACAGGAGACACTGAGAACATCTGCTTTTCCTGGCCAGCATGTAAAGgtgactatac ... ctatttgcagGAAAAATGGGCAAAAAATCTTTATTTAGGCTCCATATGCTATGGAAGATCA
EST: gi|87024232|gb|CI256973.1|CI256973
EST:     AAACACAGGAGACACTGAGAACATCTGCTTTTCCTGGCCAGCATGTAAAG                         GAAAAATGGGCAAAAAATCTTTATTTAGGCTCCATATGCTATGGAAGATCA
genomic: AAACACAGGAGACACTGAGAACATCTGCTTTTCCTGGCCAGCATGTAAAGgtgactatac ... ctatttgcagGAAAAATGGGCAAAAAATCTTTATTTAGGCTCCATATGCTATGGAAGATCA
EST: gi|88484372|gb|CI421643.1|CI421643
EST:     AAACACAGGAGACACTGAGAACATCTGCTTTTCCTGGCCAGCATGTAAAG                         GAAAAATGGGCAAAAAATCTTTATTTAGGCTCCATATGCTATGGAAGATCA
genomic: AAACACAGGAGACACTGAGAACATCTGCTTTTCCTGGCCAGCATGTAAAGgtgactatac ... ctatttgcagGAAAAATGGGCAAAAAATCTTTATTTAGGCTCCATATGCTATGGAAGATCA
EST: gi|88275485|gb|CI395336.1|CI395336
EST:     AAACACAGGAGACACTGAGAACATCTGCTTTTCCTGGCCAGCATGTAAAG                         GAAAAATGGGCAAAAAATCTTTATTTAGGGCTCCATATGCTATGGAAGATC
genomic: AAACACAGGAGACACTGAGAACATCTGCTTTTCCTGGCCAGCATGTAAAGgtgactatac ... ctatttgcagGAAAAATGGGCAAAAAATCTTTATTTAGG-CTCCATATGCTATGGAAGATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttgtgccttgtttgaactccacataacaaataaatctgataaatctatttgcagGAAAAATGGGCAAAAAATCTTTATTTAGGCTCCATATGCTATGGAAGATCAGTGTCGTGAAGTGCATTTTCCCGAGCTGGTCCTTTGTAAGATTAAGATC
                                            tctattt  CT-rich tract
                       ataacaaataaatctg  TA-rich tract