1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
gtaagaacagctcattgatattaagtgtcttagttttgcaatgacttctcatttaaaaacagttcctacatgctttctgtgacttatgtcatatcccatttttttgggaaaattggaaccatgccacttttttatccactacatctacatgtatgaaatgttaattctacattttgggttattagGGAGAAATCCGTCCCCAATGTGGGACAGGTTGGTATTTAACAAAATAAAAGCTAGGCTTGGTGGACGTGTGAGGCTTATGACTTCAGGCGCTTCTCCATT
species | Oryza sativa |
transcript | LOC_Os12g04990.2 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: AAGATTGTTTCATGCTGCATACAATGCTAAGAGGCAAGCGATTATTAATG GGAGAAATCCGTCCCCAATGTGGGACAGGTTGGTATTTAACAAAATAAAAGEST: gi|58693358|gb|CK082045.1|CK082045
genomic: AAGATTGTTTCATGCTGCATACAATGCTAAGAGGCAAGCGATTATTAATGgtaagaacag ... gggttattagGGAGAAATCCGTCCCCAATGTGGGACAGGTTGGTATTTAACAAAATAAAAG
EST: AAGATTGTTTCATGCTGCATACAATGCTAAGAGGCAAGCGATTATTAATG GGAGAAATCCGTCCCCAATGTGGGACAGGTTGGTATTTAACAAAATAAAAGEST: gi|58655107|gb|CK043787.1|CK043787
genomic: AAGATTGTTTCATGCTGCATACAATGCTAAGAGGCAAGCGATTATTAATGgtaagaacag ... gggttattagGGAGAAATCCGTCCCCAATGTGGGACAGGTTGGTATTTAACAAAATAAAAG
EST: AAGATTGTTTCATGCTGCATACAATGCTAAGAGGCAAGCGATTATTAATG GGAGAAATCCGTACCCAATGTGGGACAGGTTGGEST: gi|58659745|gb|CK048425.1|CK048425
genomic: AAGATTGTTTCATGCTGCATACAATGCTAAGAGGCAAGCGATTATTAATGgtaagaacag ... gggttattagGGAGAAATCCGTCCCCAATGTGGGACAGGTTGG
EST: AAGATTGTTTCATGCTGCATACAATGCTAAGAGGCAAGCGATGATTAATG GGAGAAATCCGTCCCCAATGTGGGACAGGTTGGTATTTAACAAAATAAAAGEST: gi|33797098|gb|CF324415.1|CF324415
genomic: AAGATTGTTTCATGCTGCATACAATGCTAAGAGGCAAGCGATTATTAATGgtaagaacag ... gggttattagGGAGAAATCCGTCCCCAATGTGGGACAGGTTGGTATTTAACAAAATAAAAG
EST: AAGATTGTTTCATGCTGCATACAATGCTAAGAGGCAAGCGATTATTAATG GGAGAAATCCGTCCCCAATGTGGGACAGGTTGGTATTTAACAAAATAAAAG
genomic: AAGATTGTTTCATGCTGCATACAATGCTAAGAGGCAAGCGATTATTAATGgtaagaacag ... gggttattagGGAGAAATCCGTCCCCAATGTGGGACAGGTTGGTATTTAACAAAATAAAAG
tttatccactacatctacatgtatgaaatgttaattctacattttgggttattagGGAGAAATCCGTCCCCAATGTGGGACAGGTTGGTATTTAACAAAATAAAAGCTAGGCTTGGTGGACGTGTGAGGCTTATGACTTCAGGCGCTTCTCCATT
tgttaat putative branch site (score: 3)
tatgaaatgttaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagaacagctcattgatattaagtgtcttagttttgcaatgacttctcatttaaaaacagttcctacatgctttctgtgacttatgtcatatcccatttttttgggaaaattggaaccatgccacttttttatccactacatctacatgtatgaaatgttaattctacattttgggttattagGGAGAAATCCGTCCCCAATGTGGGACAGGTTGGTATTTAACAAAATAAAAGCTAGGCTTGGTGGACGTGTGAGGCTTATGACTTCAGGCGCTTCTCCATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA