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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacttgtcgaacttatctcaatcgactgttgtctgataggctcaaaaagaaaagaaatttctctgatacactaatatcaaataaatttaatttttgaaaattgcatcgttttgacagCCACAAGGGCAACGGGGTGCTGCAAATGGAATAGCCACAACAGCCATGTCCTTGTTCAAGGCTATTGCTCCGGCTGGGGCAGGAGTTAT

Basic information

species Oryza sativa
transcript LOC_Os12g03860.2
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86892760|gb|CI312095.1|CI312095
EST:     ATAACTATAATTACGGGCACCTCTCTTCTGCAAAACAAAGCAGTG                         CCACAAGGGCAACGGGGTGCTGCAAATGGAATAGCCACAACAGCCATGTCC
genomic: ATAACTATAATTACGGGCACCTCTCTTCTGCAAAACAAAGCAGTGgtacttgtcg ... gttttgacagCCACAAGGGCAACGGGGTGCTGCAAATGGAATAGCCACAACAGCCATGTCC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgatacactaatatcaaataaatttaatttttgaaaattgcatcgttttgacagCCACAAGGGCAACGGGGTGCTGCAAATGGAATAGCCACAACAGCCATGTCCTTGTTCAAGGCTATTGCTCCGGCTGGGGCAGGAGTTAT
                                           tcgtttt  CT-rich tract
       actaatatcaaataaa  TA-rich tract