1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
gtttgatgcttgtttcaccttttaaaatgtatacattttttgtgaataaaagacattgtttatacttctagttatgtctattgcattatatctctgagtacattataatgtctctagGTTCACAGAGCTACTGCTGAACGCCAAATCCTTGATCTATTAGATCACCCATTCCTTCCAACATTATATGCATCATTTCAG
species | Oryza sativa |
transcript | LOC_Os12g01140.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: ACTTTGCCATGAAAGCTATGGATAAAAGCATCATGCTTAACCGCAATAAG GTTCACAGAGCTACTGCTGAACGCCAAATCCTTGATCTATTAGATCACCCAEST: gi|29623925|gb|CB628936.1|CB628936
genomic: ACTTTGCCATGAAAGCTATGGATAAAAGCATCATGCTTAACCGCAATAAGgtttgatgct ... atgtctctagGTTCACAGAGCTACTGCTGAACGCCAAATCCTTGATCTATTAGATCACCCA
EST: ACTTTGCCATGAAAGCTATGGATAAAAGCATCATGCTTAACCGCAATAAG GTTCACAGAGCTACTGCTGAACGCCAAATCCTTGATCTATTAGATCACCCAEST: gi|29622723|gb|CB627734.1|CB627734
genomic: ACTTTGCCATGAAAGCTATGGATAAAAGCATCATGCTTAACCGCAATAAGgtttgatgct ... atgtctctagGTTCACAGAGCTACTGCTGAACGCCAAATCCTTGATCTATTAGATCACCCA
EST: ACTTTGCCATGAAAGCTATGGATAAAAGCATCATGCTTAACCGCAATAAG GTTCACAGAGCTACTGCTGAACGCCAAATCCTTGATCTATTAGATCACCCAEST: gi|29672018|gb|CB668293.1|CB668293
genomic: ACTTTGCCATGAAAGCTATGGATAAAAGCATCATGCTTAACCGCAATAAGgtttgatgct ... atgtctctagGTTCACAGAGCTACTGCTGAACGCCAAATCCTTGATCTATTAGATCACCCA
EST: ACTTTGCCATGAAAGCTATGGATAAAAGCATCATGCTTAACCGCAATAAG GTTCACAGAGCTACTGCTGAACGCCAAATCCTTGATCTATTAGATCACCCAEST: gi|87007902|gb|CI296880.1|CI296880
genomic: ACTTTGCCATGAAAGCTATGGATAAAAGCATCATGCTTAACCGCAATAAGgtttgatgct ... atgtctctagGTTCACAGAGCTACTGCTGAACGCCAAATCCTTGATCTATTAGATCACCCA
EST: ACTTTGCCATGAAAGCTATGGATAAAAGCATCATGCTTAACCGCAATAAG GTTCACAGAGCTACTGCTGAACGCCAAATCCTTGATCTATTAGATCACCCAEST: gi|29613611|gb|CB618624.1|CB618624
genomic: ACTTTGCCATGAAAGCTATGGATAAAAGCATCATGCTTAACCGCAATAAGgtttgatgct ... atgtctctagGTTCACAGAGCTACTGCTGAACGCCAAATCCTTGATCTATTAGATCACCCA
EST: ACTTTGCCATGAAAGCTATGGATAAAAGCATCATGCTTAACCGCAATAAG GTTCACAGAGCTACTGCTGAEST: gi|27334351|gb|CA882802.1|CA882802
genomic: ACTTTGCCATGAAAGCTATGGATAAAAGCATCATGCTTAACCGCAATAAGgtttgatgct ... atgtctctagGTTCACAGAGCTACTGCTGA
EST: ACTTTGCCATGAAAGCTATGGATAAAAGCATCATGCTTAACCGCAATAAG GTTCACAGAGCTACTGCTGAACGCCAAATCCTTGATCTATTAGATCACCCAEST: gi|29641400|gb|CB646407.1|CB646407
genomic: ACTTTGCCATGAAAGCTATGGATAAAAGCATCATGCTTAACCGCAATAAGgtttgatgct ... atgtctctagGTTCACAGAGCTACTGCTGAACGCCAAATCCTTGATCTATTAGATCACCCA
EST: ACTTTGCCATGAAAGCTATGGATAAAAGCATCATGCTTAACCGCAATAAG GTTCACAGAGCTACTGCTGAACGCCAAATCCTTGATCTATTAGATCACCCA
genomic: ACTTTGCCATGAAAGCTATGGATAAAAGCATCATGCTTAACCGCAATAAGgtttgatgct ... atgtctctagGTTCACAGAGCTACTGCTGAACGCCAAATCCTTGATCTATTAGATCACCCA
tacttctagttatgtctattgcattatatctctgagtacattataatgtctctagGTTCACAGAGCTACTGCTGAACGCCAAATCCTTGATCTATTAGATCACCCATTCCTTCCAACATTATATGCATCATTTCAG
tgtctct CT-rich tract
tacattataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgatgcttgtttcaccttttaaaatgtatacattttttgtgaataaaagacattgtttatacttctagttatgtctattgcattatatctctgagtacattataatgtctctagGTTCACAGAGCTACTGCTGAACGCCAAATCCTTGATCTATTAGATCACCCATTCCTTCCAACATTATATGCATCATTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA