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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...caaattagcattagtaatcttaatcataaactcatagcataaatatacttacttgtacaatcccgagaagcatatcactcaccatgctcttggtatgcagGGCTAACAGAGAGTTGCTCAGGATGCTTCACATCAATCGCCAATGTTTTCTCAATGATTGGATCAGTTGGTCCTCCTGTGACGACAATCGAGGCACGGTT

Basic information

species Oryza sativa
transcript LOC_Os11g35400.4
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os11g35400.2 (Oryza sativa), 3'ss of exon 14
lower sequence: GRMZM2G104847_T01 (Zea mays), 3'ss of exon 14
--caaattagcattagtaatcttaatcataaactcatagcataaatatacttactt-----gtacaatcccgagaagcatatcactcaccatgctcttggtatgcagGGCTAACAGAGAGTTGCTCAGGATGCTTCACATCAATCGCCAATGTTTTCTCAATGATTGGATCAGTTGGTCCTCCTGTGACGACAATCGAGGCACGGTT
  |||   | ||      | |  |||  ||   |  || |   | | | ||   ||     | || | |  |||     | | |||   |||    ||| || |||||||| || ||||||||  ||||||||||||| |||||||||||  ||||||||||||||||| |||| || |||||||| || ||||| || |||||| |
tgcaaccgatcaaggcctaacaaaattctactattctacctccagtctgctcctttcctgggaacgaccttgagg----tctgacttgtcata---ttgatacgcagGGCTCACTGAGAGTTGTGCAGGATGCTTCACGTCAATCGCCAACATTTTCTCAATGATTGGAACAGTCGGCCCTCCTGTCACAACAATAGAAGCACGGCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58668934|gb|CK057620.1|CK057620
EST:     CGAAGAATTCATGCGGGTTACCAGCTGCAGTGTACTTGTACAAGGATATG                         GGCTAACAGAGAGTTGCTCAGGATGCTTCACATCAATCGCCAATGTTTTCT
genomic: CGAAGAATTCATGCGGGTTACCAGCTGCAGTGTACTTGTACAAGGATATGgtgagttcca ... tggtatgcagGGCTAACAGAGAGTTGCTCAGGATGCTTCACATCAATCGCCAATGTTTTCT
EST: gi|58659138|gb|CK047818.1|CK047818
EST:     CGAAGAATTCATGCGGGTTACCAGCTGCAGTGTACTTGTACAAGGATATG                         GGCTAACAGAGAGTTGCTCAGGATGCTTCACATC
genomic: CGAAGAATTCATGCGGGTTACCAGCTGCAGTGTACTTGTACAAGGATATGgtgagttcca ... tggtatgcagGGCTAACAGAGAGTTGCTCAGGATGCTTCACATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacttacttgtacaatcccgagaagcatatcactcaccatgctcttggtatgcagGGCTAACAGAGAGTTGCTCAGGATGCTTCACATCAATCGCCAATGTTTTCTCAATGATTGGATCAGTTGGTCCTCCTGTGACGACAATCGAGGCACGGTT
                                       tgctctt  CT-rich tract