1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...tgtcattcatacatgaaaaattcttatcatatgctgtagaattgggaggatagctttattcacatttccttctctttctttttctttttttgaatctcagATGGGATCCAAGTTCAAGAAATCACTGGTCTCAGAGAGTGTGAGGGAGTCACTCCACAGCTGGTGCAAGAGGGTGAAAGACAAGAACAGGCACAACCTGG
species | Oryza sativa |
transcript | LOC_Os11g07912.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: TAATGTAATCATTACTCAG ATGGGATCCAAGTTCAAGAAATCACTGGTCTCAGAGAGTGTGAGGGAGTCAEST: gi|88958533|gb|CI096049.1|CI096049
genomic: TAATGTAATCATTACTCAGgtattctggt ... tgaatctcagATGGGATCCAAGTTCAAGAAATCACTGGTCTCAGAGAGTGTGAGGGAGTCA
EST: AGTTCTGGTGCAGCTACAACACATTGCCACTTAATGTAATCATTACTCAG ATGGGATCCAAGTTCAAGAAATCACTGGTCTCAGAGAGTGTGAGGGAGTCAEST: gi|86483422|gb|CI126055.1|CI126055
genomic: AGTTCTGGTGCAGCTACAACACATTGCCACTTAATGTAATCATTACTCAGgtattctggt ... tgaatctcagATGGGATCCAAGTTCAAGAAATCACTGGTCTCAGAGAGTGTGAGGGAGTCA
EST: ATGTAATCATTACTCAG ATGGGATCCAAGTTCAAGAAATCACTGGTCTCAGAGAGTGTGAGGGAGTCAEST: gi|89180509|gb|CI044788.1|CI044788
genomic: ATGTAATCATTACTCAGgtattctggt ... tgaatctcagATGGGATCCAAGTTCAAGAAATCACTGGTCTCAGAGAGTGTGAGGGAGTCA
EST: CACATTGCCACTTAATGTAATCATTACTCAG ATGGGATCCAAGTTCAAGAAATCACTGGTCTCAGAGAGTGTGAGGGAGTCAEST: gi|112786835|gb|EE591535.1|EE591535
genomic: CACATTGCCACTTAATGTAATCATTACTCAGgtattctggt ... tgaatctcagATGGGATCCAAGTTCAAGAAATCACTGGTCTCAGAGAGTGTGAGGGAGTCA
EST: AGTTCTGGTGCAGCTACAACACATTGCCACTTAATGTAATCATTACTCAG ATGGGATCCAAGTTCAAGAAATCACTGGTCTCAGAGAGTGTGAGGGAGTCAEST: gi|88225766|gb|CI225682.1|CI225682
genomic: AGTTCTGGTGCAGCTACAACACATTGCCACTTAATGTAATCATTACTCAGgtattctggt ... tgaatctcagATGGGATCCAAGTTCAAGAAATCACTGGTCTCAGAGAGTGTGAGGGAGTCA
EST: TTGCCACTTAATGTAATCATTACTCAG ATGGGATCCAAGTTCAAGAAATCACTGGTCTCAGAGAGTGTGAGGGAGTCA
genomic: TTGCCACTTAATGTAATCATTACTCAGgtattctggt ... tgaatctcagATGGGATCCAAGTTCAAGAAATCACTGGTCTCAGAGAGTGTGAGGGAGTCA
gaggatagctttattcacatttccttctctttctttttctttttttgaatctcagATGGGATCCAAGTTCAAGAAATCACTGGTCTCAGAGAGTGTGAGGGAGTCACTCCACAGCTGGTGCAAGAGGGTGAAAGACAAGAACAGGCACAACCTGG
ctttattcacatttcc CT-rich tract
tttctttttctttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtcattcatacatgaaaaattcttatcatatgctgtagaattgggaggatagctttattcacatttccttctctttctttttctttttttgaatctcagATGGGATCCAAGTTCAAGAAATCACTGGTCTCAGAGAGTGTGAGGGAGTCACTCCACAGCTGGTGCAAGAGGGTGAAAGACAAGAACAGGCACAACCTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - atacatg
- - - - - - - - - - - - - - -tatgctg