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gtatgccctatttaacattctctatatcatttcattttgctagcacttttgcataagaccacttattttataatgtggttgtcccagGCAATGGTAGACAAGGGTACGCTAATCAAGCAAACAATATGTATCTGTTTCCTGG
species | Oryza sativa |
transcript | LOC_Os10g35960.2 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: AGACAATGCAGTATTTGCCAGTGGAAGCCCTTTCAGTAATGTCACTTTAG GCAATGGTAGACAAGGGTACGCTAATCAAGCAAACAACATGTATCTGTTTCEST: gi|4715753|gb|AU056869.1|AU056869
genomic: AGACAATGCAGTATTTGCCAGTGGAAGCCCTTTCAGTAATGTCACTTTAGgtatgcccta ... gttgtcccagGCAATGGTAGACAAGGGTACGCTAATCAAGCAAACAATATGTATCTGTTTC
EST: AGACAATGCAGTATTTGCCAGTGGAAGCCCTTTCAGTAATGTCACTTTAG GCAATGGTAGACAAGGGTACGCTAATCAAGCAAACAATATGTATCTGTTTCEST: gi|25799623|gb|CA755584.1|CA755584
genomic: AGACAATGCAGTATTTGCCAGTGGAAGCCCTTTCAGTAATGTCACTTTAGgtatgcccta ... gttgtcccagGCAATGGTAGACAAGGGTACGCTAATCAAGCAAACAATATGTATCTGTTTC
EST: AGACAATGCAGTATTTGCCAGTGGAAGCCCTTTCAGTAATGTCACTTTAG GCAATGGTAGACAAGGGTAC
genomic: AGACAATGCAGTATTTGCCAGTGGAAGCCCTTTCAGTAATGTCACTTTAGgtatgcccta ... gttgtcccagGCAATGGTAGACAAGGGTAC
cattttgctagcacttttgcataagaccacttattttataatgtggttgtcccagGCAATGGTAGACAAGGGTACGCTAATCAAGCAAACAATATGTATCTGTTTCCTGG
ttgtccc CT-rich tract
acttattttataatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgccctatttaacattctctatatcatttcattttgctagcacttttgcataagaccacttattttataatgtggttgtcccagGCAATGGTAGACAAGGGTACGCTAATCAAGCAAACAATATGTATCTGTTTCCTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA