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...taccgctgataacttactttgacaattataacatttctacaagtactttagttttgaaagtaatgttatgttgataattttttgtaacttatttttccagTGATCACATTGCTCTTGTTAAGGCGTTCGAAGCATGGAAGGAAGCAAGACGCAGTGGAAGAGAACGCTCTTTCTGCTGGGAAAATTTCCTTTCACCCATG
species | Oryza sativa |
transcript | LOC_Os10g33275.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: GCTGATGCTGTCAAAAGATCATTTGCTGGTGACTCCTGCAG TGATCACATTGCTCTTGGGTAAGGCGTTCGAAGCATGGAAGGAAGCAAGACEST: gi|33381742|gb|CF197085.1|CF197085
genomic: GCTGATGCTGTCAAAAGATCATTTGCTGGTGACTCCTGCAGgtaattaata ... atttttccagTGATCACATTGCTCTT-GTTAAGGCGTTCGAAGCATGGAAGGAAGCAAGAC
EST: AAAGAAGAAGCTGATGCTGTCAAAAGATCATTTGCTGGTGACTCCTGCAG TGATCACATTGCTCTTGTTAAGGCGTTCGANGCATGEST: gi|29681906|gb|CB678181.1|CB678181
genomic: AAAGAAGAAGCTGATGCTGTCAAAAGATCATTTGCTGGTGACTCCTGCAGgtaattaata ... atttttccagTGATCACATTGCTCTTGTTAAGGCGTTCGAAGCATG
EST: AAAGAAGAAGCTGATGCTGTCAAAAGATCATTTGCTGGTGACTCCTGCAG TGATCACATTGCTCTTGTTAAGGCGTTCGAAGCATGGAAGGAAGCAAGACGEST: gi|58600773|gb|CK011301.1|CK011301
genomic: AAAGAAGAAGCTGATGCTGTCAAAAGATCATTTGCTGGTGACTCCTGCAGgtaattaata ... atttttccagTGATCACATTGCTCTTGTTAAGGCGTTCGAAGCATGGAAGGAAGCAAGACG
EST: AAAGAAGAAGCTGATGCTGTCAAAAGATCATTTGCTGGTGACTCCTGCAG TGATCACATTGCTCTTGTTAAGGCGTTCGAEST: gi|218492590|gb|FG952568.1|FG952568
genomic: AAAGAAGAAGCTGATGCTGTCAAAAGATCATTTGCTGGTGACTCCTGCAGgtaattaata ... atttttccagTGATCACATTGCTCTTGTTAAGGCGTTCGA
EST: AAAGAAGAAGCTGATGCTGTCACAAGATCATTTGCTGGTGACTCCTGCAG TGATCACATTGCTCTTGTTAAGGCGTTCGAAGCATGGAAGGAAGCAAGACGEST: gi|29675438|gb|CB671713.1|CB671713
genomic: AAAGAAGAAGCTGATGCTGTCAAAAGATCATTTGCTGGTGACTCCTGCAGgtaattaata ... atttttccagTGATCACATTGCTCTTGTTAAGGCGTTCGAAGCATGGAAGGAAGCAAGACG
EST: AAAGAAGAAGCTGATGCTGTCAAAAGATCATTTGCTGGTGACTCCTGCAG TGATCACATTGCTCTTGTTAAGGCGTTCGAAGCATGGAAGGAAGCAAGACG
genomic: AAAGAAGAAGCTGATGCTGTCAAAAGATCATTTGCTGGTGACTCCTGCAGgtaattaata ... atttttccagTGATCACATTGCTCTTGTTAAGGCGTTCGAAGCATGGAAGGAAGCAAGACG
ctttagttttgaaagtaatgttatgttgataattttttgtaacttatttttccagTGATCACATTGCTCTTGTTAAGGCGTTCGAAGCATGGAAGGAAGCAAGACGCAGTGGAAGAGAACGCTCTTTCTGCTGGGAAAATTTCCTTTCACCCATG
ttgtaac putative branch site (score: 2)
cttatttttcc CT-rich tract
taatgttatgttgata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taccgctgataacttactttgacaattataacatttctacaagtactttagttttgaaagtaatgttatgttgataattttttgtaacttatttttccagTGATCACATTGCTCTTGTTAAGGCGTTCGAAGCATGGAAGGAAGCAAGACGCAGTGGAAGAGAACGCTCTTTCTGCTGGGAAAATTTCCTTTCACCCATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
-accgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaagtaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgttga