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...gttatttttgttctctataggataacagaaatatccagagctgctgcatagtattagagtataacagttgatttaactagattttatggtctgtgtgcagCCGTATTGGGCCGCTTACCTGGCACCACAGTGTACCGAAATAGATTGCAATACCCTGAGGCTTATACCTACAACGGGATAGTTGTTGTTCGAATTGATGC
species | Oryza sativa |
transcript | LOC_Os09g06499.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: TCAGCAAATCCTCATATCG CCGTATTGGGCCGCTTACCTGGCACCACAGTGTACCGAAATAGATTGCAATEST: gi|29661763|gb|CB658038.1|CB658038
genomic: TCAGCAAATCCTCATATCGgtgagtaatt ... ctgtgtgcagCCGTATTGGGCCGCTTACCTGGCACCACAGTGTACCGAAATAGATTGCAAT
EST: CGGATTCTCATTGGCCTTTGTAATCCATGAGTCAGCAAATCCTCATATCG CCGTATTGGGCCGCTTACCTGGCACCACAGTGTACCGAAATAGATTGCAATEST: gi|29674507|gb|CB670782.1|CB670782
genomic: CGGATTCTCATTGGCCTTTGTAATCCATGAGTCAGCAAATCCTCATATCGgtgagtaatt ... ctgtgtgcagCCGTATTGGGCCGCTTACCTGGCACCACAGTGTACCGAAATAGATTGCAAT
EST: CGGATTCTCATTGGCCTTTGTAATCCATGAGTCAGCAAATCCTCATATCG CCGTATTGGGCCGCTTACCTGGCACCACAGTGTACCGAAATAGATTGCAATEST: gi|86900178|gb|CI300201.1|CI300201
genomic: CGGATTCTCATTGGCCTTTGTAATCCATGAGTCAGCAAATCCTCATATCGgtgagtaatt ... ctgtgtgcagCCGTATTGGGCCGCTTACCTGGCACCACAGTGTACCGAAATAGATTGCAAT
EST: CGGATTCTCATTGGCCTTTGTAATCCATGAGTCAGCAAATCCTCATATCG CCGTATTGGGCCGCTTACCTGGCACCACAGTGTACCGAAATAGATTGCAAT
genomic: CGGATTCTCATTGGCCTTTGTAATCCATGAGTCAGCAAATCCTCATATCGgtgagtaatt ... ctgtgtgcagCCGTATTGGGCCGCTTACCTGGCACCACAGTGTACCGAAATAGATTGCAAT
gcatagtattagagtataacagttgatttaactagattttatggtctgtgtgcagCCGTATTGGGCCGCTTACCTGGCACCACAGTGTACCGAAATAGATTGCAATACCCTGAGGCTTATACCTACAACGGGATAGTTGTTGTTCGAATTGATGC
atttaac putative branch site (score: 20)
atttaactagatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttatttttgttctctataggataacagaaatatccagagctgctgcatagtattagagtataacagttgatttaactagattttatggtctgtgtgcagCCGTATTGGGCCGCTTACCTGGCACCACAGTGTACCGAAATAGATTGCAATACCCTGAGGCTTATACCTACAACGGGATAGTTGTTGTTCGAATTGATGC
- - - -ttgttct
- - - - - - - - - - - - acagaaa
- - - - - - - - - - - - - - - - - - - - -tgctgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gttgatt