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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgaaccatttttatgtgttattgtagttagacagtctttcttgtttcttagtgctgatttactgtaaattccttgtatgtaccagGTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCG

Basic information

species Oryza sativa
transcript LOC_Os08g43060.1
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22307949|gb|BQ909171.1|BQ909171
EST:     CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAG                         GTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
genomic: CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAGgtatgaacca ... tatgtaccagGTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
EST: gi|86517289|gb|CI157495.1|CI157495
EST:     CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAG                         GTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
genomic: CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAGgtatgaacca ... tatgtaccagGTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
EST: gi|58678770|gb|CK067457.1|CK067457
EST:     CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAG                         GTCTACGGGGC
genomic: CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAGgtatgaacca ... tatgtaccagGTCTACGGGGC
EST: gi|86477539|gb|CI120172.1|CI120172
EST:     CTTCCTGCAGGTAATACCAGGCATGGCTATGGTGGGAAGCAACAGGGAAG                         GTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
genomic: CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAGgtatgaacca ... tatgtaccagGTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
EST: gi|86478390|gb|CI121023.1|CI121023
EST:     CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAG                         GTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
genomic: CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAGgtatgaacca ... tatgtaccagGTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
EST: gi|8334619|gb|BE039603.1|BE039603
EST:     CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAG                         GTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
genomic: CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAGgtatgaacca ... tatgtaccagGTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
EST: gi|88234335|gb|CI234184.1|CI234184
EST:     TTCCTGCAGGTAATACCAGGCAAGGTTATGGTGGGAAGCAACAGGGAAG                         GTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
genomic: TTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAGgtatgaacca ... tatgtaccagGTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
EST: gi|29638767|gb|CB643776.1|CB643776
EST:     CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAG                         GTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
genomic: CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAGgtatgaacca ... tatgtaccagGTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
EST: gi|88229136|gb|CI229012.1|CI229012
EST:     CTTCCTGCAGGTAATACCGGGCATGGTTATGGTGGGAAGCAACAGGGAAG                         GTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
genomic: CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAGgtatgaacca ... tatgtaccagGTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
EST: gi|88236313|gb|CI235515.1|CI235515
EST:     CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAG                         GTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
genomic: CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAGgtatgaacca ... tatgtaccagGTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
EST: gi|88966352|gb|CI119487.1|CI119487
EST:     CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAG                         GTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
genomic: CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAGgtatgaacca ... tatgtaccagGTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
EST: gi|88253718|gb|CI352344.1|CI352344
EST:     CTTCCTGCAGGTAATACCAGGCATGTTTATGGTGGGAAGCAACAGGGAAG                         GTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
genomic: CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAGgtatgaacca ... tatgtaccagGTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
EST: gi|87017915|gb|CI273937.1|CI273937
EST:     CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAG                         GTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
genomic: CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAGgtatgaacca ... tatgtaccagGTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
EST: gi|88966258|gb|CI119393.1|CI119393
EST:     CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAG                         GTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
genomic: CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAGgtatgaacca ... tatgtaccagGTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
EST: gi|89180178|gb|CI044457.1|CI044457
EST:     CCAGGCATGGTTATGGTGGGAAGCAACAGGGAAG                         GTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
genomic: CCAGGCATGGTTATGGTGGGAAGCAACAGGGAAGgtatgaacca ... tatgtaccagGTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
EST: gi|86477909|gb|CI120542.1|CI120542
EST:     CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAG                         GTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
genomic: CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAGgtatgaacca ... tatgtaccagGTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
EST: gi|86592946|gb|CI270503.1|CI270503
EST:     CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAG                         GTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
genomic: CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAGgtatgaacca ... tatgtaccagGTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
EST: gi|86827364|gb|CI270995.1|CI270995
EST:     CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAG                         GTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
genomic: CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAGgtatgaacca ... tatgtaccagGTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
EST: gi|29644585|gb|CB649592.1|CB649592
EST:     CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAG                         GTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
genomic: CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAGgtatgaacca ... tatgtaccagGTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
EST: gi|29629805|gb|CB634814.1|CB634814
EST:     CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAG                         GTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
genomic: CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAGgtatgaacca ... tatgtaccagGTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
EST: gi|86903060|gb|CI324530.1|CI324530
EST:     TTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAG                         GTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
genomic: TTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAGgtatgaacca ... tatgtaccagGTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
EST: gi|86479608|gb|CI122241.1|CI122241
EST:     CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAG                         GTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
genomic: CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAGgtatgaacca ... tatgtaccagGTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
EST: gi|88837478|gb|CI078838.1|CI078838
EST:     CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAG                         GTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
genomic: CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAGgtatgaacca ... tatgtaccagGTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
EST: gi|86874223|gb|CI335848.1|CI335848
EST:     CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAG                         GTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
genomic: CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAGgtatgaacca ... tatgtaccagGTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
EST: gi|86478258|gb|CI120891.1|CI120891
EST:     CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAG                         GTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
genomic: CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAGgtatgaacca ... tatgtaccagGTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
EST: gi|86481349|gb|CI123982.1|CI123982
EST:     CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAG                         GTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
genomic: CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAGgtatgaacca ... tatgtaccagGTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
EST: gi|86481643|gb|CI124276.1|CI124276
EST:     CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAG                         GTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
genomic: CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAGgtatgaacca ... tatgtaccagGTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
EST: gi|86479317|gb|CI121950.1|CI121950
EST:     CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAG                         GTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
genomic: CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAGgtatgaacca ... tatgtaccagGTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
EST: gi|88267039|gb|CI378974.1|CI378974
EST:     TACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAG                         GTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
genomic: TACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAGgtatgaacca ... tatgtaccagGTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
EST: gi|87023326|gb|CI272154.1|CI272154
EST:     CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAG                         GTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
genomic: CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAGgtatgaacca ... tatgtaccagGTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
EST: gi|86596849|gb|CI270645.1|CI270645
EST:     CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAG                         GTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
genomic: CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAGgtatgaacca ... tatgtaccagGTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
EST: gi|87039410|gb|CI194032.1|CI194032
EST:     CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAG                         GTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
genomic: CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAGgtatgaacca ... tatgtaccagGTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
EST: gi|86482575|gb|CI125208.1|CI125208
EST:     CCTGCAGGTAATACCAGGCCATGGTTATGGTGGGAAGCAACAGGGAAG                         GTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
genomic: CCTGCAGGTAATACCAGG-CATGGTTATGGTGGGAAGCAACAGGGAAGgtatgaacca ... tatgtaccagGTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
EST: gi|87029814|gb|CI274495.1|CI274495
EST:     CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAG                         GTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
genomic: CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAGgtatgaacca ... tatgtaccagGTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
EST: gi|86437268|gb|CI118990.1|CI118990
EST:     TTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACCAGGGAAG                         GTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGT
genomic: TTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAA-CAGGGAAGgtatgaacca ... tatgtaccagGTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGT
EST: gi|88230047|gb|CI229923.1|CI229923
EST:     CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAG                         GTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
genomic: CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAGgtatgaacca ... tatgtaccagGTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
EST: gi|86519307|gb|CI159513.1|CI159513
EST:     CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAG                         GTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
genomic: CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAGgtatgaacca ... tatgtaccagGTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
EST: gi|88901905|gb|CI374513.1|CI374513
EST:     CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAG                         GTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
genomic: CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAGgtatgaacca ... tatgtaccagGTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
EST: gi|86437377|gb|CI119099.1|CI119099
EST:     CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAG                         GTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
genomic: CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAGgtatgaacca ... tatgtaccagGTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
EST: gi|88519405|gb|CI447059.1|CI447059
EST:     CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAG                         GTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTTTCGTT
genomic: CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAGgtatgaacca ... tatgtaccagGTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
EST: gi|86431019|gb|CI083442.1|CI083442
EST:     CTTCCTGCAGGTAATACCAGG-ATGGTTATGGTGGGAAGCAACAGGGAAG                         GTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
genomic: CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAGgtatgaacca ... tatgtaccagGTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
EST: gi|87040130|gb|CI193339.1|CI193339
EST:     CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAG                         GTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
genomic: CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAGgtatgaacca ... tatgtaccagGTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
EST: gi|86436912|gb|CI118634.1|CI118634
EST:     CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAG                         GTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
genomic: CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAGgtatgaacca ... tatgtaccagGTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
EST: gi|86519969|gb|CI160175.1|CI160175
EST:     CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAG                         GTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
genomic: CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAGgtatgaacca ... tatgtaccagGTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
EST: gi|86517626|gb|CI157832.1|CI157832
EST:     CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAG                         GTCTACGGGGCCTGCATACGTTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
genomic: CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAGgtatgaacca ... tatgtaccagGTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
EST: gi|88320775|gb|CI527927.1|CI527927
EST:     CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAG                         GTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
genomic: CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAGgtatgaacca ... tatgtaccagGTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
EST: gi|88262794|gb|CI364372.1|CI364372
EST:     CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAG                         GTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
genomic: CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAGgtatgaacca ... tatgtaccagGTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
EST: gi|86260426|gb|CI066299.1|CI066299
EST:     CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAG                         GTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
genomic: CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAGgtatgaacca ... tatgtaccagGTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
EST: gi|88198560|gb|CI198410.1|CI198410
EST:     CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAG                         GTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
genomic: CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAGgtatgaacca ... tatgtaccagGTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
EST: gi|86480896|gb|CI123529.1|CI123529
EST:     CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAG                         GTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
genomic: CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAGgtatgaacca ... tatgtaccagGTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
EST: gi|86513495|gb|CI156128.1|CI156128
EST:     CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAG                         GTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
genomic: CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAGgtatgaacca ... tatgtaccagGTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
EST: gi|88989441|gb|CI043900.1|CI043900
EST:     GGCATGGTTATGGTGGGAAGCAACAGGGAAG                         GTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
genomic: GGCATGGTTATGGTGGGAAGCAACAGGGAAGgtatgaacca ... tatgtaccagGTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
EST: gi|86482501|gb|CI125134.1|CI125134
EST:     CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAG                         GTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
genomic: CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAGgtatgaacca ... tatgtaccagGTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
EST: gi|16753685|gb|BM038064.1|BM038064
EST:     CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGC-ACAGGGAAG                         GTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
genomic: CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAGgtatgaacca ... tatgtaccagGTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
EST: gi|33809595|gb|CF330690.1|CF330690
EST:     CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAG                         GTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
genomic: CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAGgtatgaacca ... tatgtaccagGTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
EST: gi|87022824|gb|CI269760.1|CI269760
EST:     CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAG                         GTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
genomic: CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAGgtatgaacca ... tatgtaccagGTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
EST: gi|88233738|gb|CI233587.1|CI233587
EST:     CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAG                         GTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
genomic: CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAGgtatgaacca ... tatgtaccagGTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
EST: gi|89195756|gb|CI007175.1|CI007175
EST:     CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAG                         GTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
genomic: CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAGgtatgaacca ... tatgtaccagGTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
EST: gi|29676333|gb|CB672608.1|CB672608
EST:     CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAG                         GTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
genomic: CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAGgtatgaacca ... tatgtaccagGTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
EST: gi|86882140|gb|CI325670.1|CI325670
EST:     CTTCCTGCAGGTAATACCAGGCATGGTTAT-GTGGGAAGCAACAGGGAAG                         GTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
genomic: CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAGgtatgaacca ... tatgtaccagGTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
EST: gi|88490347|gb|CI427619.1|CI427619
EST:     CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAG                         GTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
genomic: CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAGgtatgaacca ... tatgtaccagGTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
EST: gi|86827392|gb|CI272808.1|CI272808
EST:     CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAG                         GTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
genomic: CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAGgtatgaacca ... tatgtaccagGTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
EST: gi|86514669|gb|CI157302.1|CI157302
EST:     CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAG                         GTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
genomic: CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAGgtatgaacca ... tatgtaccagGTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
EST: gi|88515986|gb|CI443640.1|CI443640
EST:     CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAG                         GTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
genomic: CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAGgtatgaacca ... tatgtaccagGTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
EST: gi|87035974|gb|CI190596.1|CI190596
EST:     CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAG                         GTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
genomic: CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAGgtatgaacca ... tatgtaccagGTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
EST: gi|86852061|gb|CI317814.1|CI317814
EST:     CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAG                         GTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
genomic: CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAGgtatgaacca ... tatgtaccagGTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
EST: gi|86517669|gb|CI157875.1|CI157875
EST:     CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAG                         GTCTACGGGGCCTGCATACGTTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
genomic: CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAGgtatgaacca ... tatgtaccagGTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
EST: gi|88842562|gb|CI081818.1|CI081818
EST:     CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAG                         GTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
genomic: CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAGgtatgaacca ... tatgtaccagGTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
EST: gi|86520382|gb|CI160588.1|CI160588
EST:     CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAG                         GTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
genomic: CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAGgtatgaacca ... tatgtaccagGTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
EST: gi|89187335|gb|CI047402.1|CI047402
EST:     CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAG                         GTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
genomic: CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAGgtatgaacca ... tatgtaccagGTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
EST: gi|86520199|gb|CI160405.1|CI160405
EST:     CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAG                         GTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
genomic: CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAGgtatgaacca ... tatgtaccagGTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
EST: gi|88842807|gb|CI371707.1|CI371707
EST:     CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAG                         GTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
genomic: CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAGgtatgaacca ... tatgtaccagGTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
EST: gi|86518665|gb|CI158871.1|CI158871
EST:     CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAG                         GTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
genomic: CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAGgtatgaacca ... tatgtaccagGTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
EST: gi|88233390|gb|CI233239.1|CI233239
EST:     CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAG                         GTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
genomic: CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAGgtatgaacca ... tatgtaccagGTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
EST: gi|87021512|gb|CI274119.1|CI274119
EST:     CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAG                         GTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
genomic: CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAGgtatgaacca ... tatgtaccagGTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
EST: gi|88221458|gb|CI221414.1|CI221414
EST:     CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAG                         GTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
genomic: CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAGgtatgaacca ... tatgtaccagGTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
EST: gi|88227001|gb|CI228481.1|CI228481
EST:     CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCTACAGGGAAG                         GTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
genomic: CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAGgtatgaacca ... tatgtaccagGTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
EST: gi|88230910|gb|CI228815.1|CI228815
EST:     CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAG                         GTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT
genomic: CTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAGgtatgaacca ... tatgtaccagGTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 54 (downstream exon)
Score: 19

CATCCATGCATGCTGTTTCTGCAAATGGAGTCAGACAGGAACGATCTGGCCTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAGgtatgaacca ... tatgtaccagGTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acagtctttcttgtttcttagtgctgatttactgtaaattccttgtatgtaccagGTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCG
                     tgctgat  putative branch site (score: 19)
                                      ttccttgt  putative PPT
                          atttactgtaaatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatgaaccatttttatgtgttattgtagttagacagtctttcttgtttcttagtgctgatttactgtaaattccttgtatgtaccagGTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCAAG