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...gatgctgtctatgctcatggatagcagcttccttgcctattctttattgtcatatgagctttgtttacgatatgttgactttgcttcgtctccactgcagTGTGACTCGGAATTATTTTGAGAACCTTGTTCAAGCACTGGAGGCTGGCTTGGAGGATGTACACTCTACTGCCCAGGGTACCACATCAAGCAATGCCACC
species | Oryza sativa |
transcript | LOC_Os08g42740.5 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: TC-ATTGCTGAATTCGGTGACTTCCGGGTGAAGCTTGCGGGGCTGACAAG TGTGACTCGGAATTATTTTGAGAACCTTGTTCAAGCACTGGAGGCTGGCTTEST: gi|29622237|gb|CB627248.1|CB627248
genomic: TCAATTGCTGAATTCGGTGACTTCCGGGTGAAGCTTGCGGGGCTGACAAGgtatttcaca ... tccactgcagTGTGACTCGGAATTATTTTGAGAACCTTGTTCAAGCACTGGAGGCTGGCTT
EST: TCAATTGCTGAATTCGGTGACTTCCGGGTGAAGCTTGCGGGGCTGACAAG TGTGACTCGGAATTATTTTGAGAACCTTGTTCAAGCACTGGAGGCTGGCTTEST: gi|29673217|gb|CB669492.1|CB669492
genomic: TCAATTGCTGAATTCGGTGACTTCCGGGTGAAGCTTGCGGGGCTGACAAGgtatttcaca ... tccactgcagTGTGACTCGGAATTATTTTGAGAACCTTGTTCAAGCACTGGAGGCTGGCTT
EST: TCAATTGCTGAATTCGGTGACTTCCGGGTGAAGCTTGCGGGGCTGACAAG TGTGACTCGGAATTATTTTGAGAACCTTGTTCAAGCACTGGAGGCTGGCTTEST: gi|29628042|gb|CB633053.1|CB633053
genomic: TCAATTGCTGAATTCGGTGACTTCCGGGTGAAGCTTGCGGGGCTGACAAGgtatttcaca ... tccactgcagTGTGACTCGGAATTATTTTGAGAACCTTGTTCAAGCACTGGAGGCTGGCTT
EST: TCAATTGCTGAATTCGGTGACTTCCGGGTGAAGCTTGCGGGGCTGACAAG TGTGACTCGGAATTATTTTGAGAACCTTGTTCAAGCACTGGAGGCTGGCTTEST: gi|29622680|gb|CB627691.1|CB627691
genomic: TCAATTGCTGAATTCGGTGACTTCCGGGTGAAGCTTGCGGGGCTGACAAGgtatttcaca ... tccactgcagTGTGACTCGGAATTATTTTGAGAACCTTGTTCAAGCACTGGAGGCTGGCTT
EST: TCAATTGCTGAATTCGGTGACTTCCGGGTGAAGCTTGCGGGGCTGACAAG TGTGACTCGGAATTATTTTGAGAACCTTGTTCAAGCACTGGAGGCTGGCTTEST: gi|29643283|gb|CB648290.1|CB648290
genomic: TCAATTGCTGAATTCGGTGACTTCCGGGTGAAGCTTGCGGGGCTGACAAGgtatttcaca ... tccactgcagTGTGACTCGGAATTATTTTGAGAACCTTGTTCAAGCACTGGAGGCTGGCTT
EST: TCAATTGCTGAATTCGGTGACTTCCGGGTGAAGCTTGCGGGGCTGACAAG TGTGACTCGGAATTATTTTGAGAACCTTGTTCAAGCACTGGAGGCTGGCTTEST: gi|38477634|gb|CF961767.1|CF961767
genomic: TCAATTGCTGAATTCGGTGACTTCCGGGTGAAGCTTGCGGGGCTGACAAGgtatttcaca ... tccactgcagTGTGACTCGGAATTATTTTGAGAACCTTGTTCAAGCACTGGAGGCTGGCTT
EST: TCAATTGCTGAATTCGGTGACTTCCGGGTGAAGCTTGCGGGGCTGACAAG TGTGACTCGGAATTATTTTGAGAAGCTTGTTCAAGCACTGGAGGCTGGCTTEST: gi|29623233|gb|CB628244.1|CB628244
genomic: TCAATTGCTGAATTCGGTGACTTCCGGGTGAAGCTTGCGGGGCTGACAAGgtatttcaca ... tccactgcagTGTGACTCGGAATTATTTTGAGAACCTTGTTCAAGCACTGGAGGCTGGCTT
EST: TCAATTGCTGAATTCGGTGACTTCCGGGTGAAGCTTGCGGGGCTGACAAG TGTGACTCGGAATTATTTTGAGAACCTTGTTCAAGCACTGGAGGCTGGCTTEST: gi|29643281|gb|CB648288.1|CB648288
genomic: TCAATTGCTGAATTCGGTGACTTCCGGGTGAAGCTTGCGGGGCTGACAAGgtatttcaca ... tccactgcagTGTGACTCGGAATTATTTTGAGAACCTTGTTCAAGCACTGGAGGCTGGCTT
EST: TCAATTGCTGAATTCTGTGACTTCCGGGTGAAGCTTGCGGGGCTGACAAG TGTGACTCGGAATTATTTTGAGAACCTTGEST: gi|29677672|gb|CB673947.1|CB673947
genomic: TCAATTGCTGAATTCGGTGACTTCCGGGTGAAGCTTGCGGGGCTGACAAGgtatttcaca ... tccactgcagTGTGACTCGGAATTATTTTGAGAACCTTG
EST: TCAATTGCTGAATTCGGTGACTTCCGGGTGAAGCTTGCGGCGCTGACAAG TGTGACTCGGAATTATTTTGAGAACCTTGTTCAAGCACTGGAGGCTGGCTT
genomic: TCAATTGCTGAATTCGGTGACTTCCGGGTGAAGCTTGCGGGGCTGACAAGgtatttcaca ... tccactgcagTGTGACTCGGAATTATTTTGAGAACCTTGTTCAAGCACTGGAGGCTGGCTT
attgtcatatgagctttgtttacgatatgttgactttgcttcgtctccactgcagTGTGACTCGGAATTATTTTGAGAACCTTGTTCAAGCACTGGAGGCTGGCTTGGAGGATGTACACTCTACTGCCCAGGGTACCACATCAAGCAATGCCACC
tgttgac putative branch site (score: 3)
ctttgcttcgtctcc CT-rich tract
tttgttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatgctgtctatgctcatggatagcagcttccttgcctattctttattgtcatatgagctttgtttacgatatgttgactttgcttcgtctccactgcagTGTGACTCGGAATTATTTTGAGAACCTTGTTCAAGCACTGGAGGCTGGCTTGGAGGATGTACACTCTACTGCCCAGGGTACCACATCAAGCAATGCCACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA