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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacctcagttatttatgagatataccatcatttcagatttttttttatctgattagttatttcatacaatggccagAAACTTGGGGATTCAGTACTTCGGCCATTTCTCCAG

Basic information

species Oryza sativa
transcript LOC_Os08g32630.1
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g32630.5 (Oryza sativa), 3'ss of exon 13
lower sequence: GRMZM5G851815_T02 (Zea mays), 3'ss of exon 14
gtaacctcagttatttatgagatataccatcatttcag--attttttt----ttatctgattagttatttcatacaatggccagAAACTTGGGGATTCAGTACTTCGGCCATTTCTCCAG
||||| | || ||  ||  || || |||||    |||   ||| | ||    |||| ||| |  | ||||| | |||||  |||||||| |||||||| ||||||||||||||||| |||
gtaacttaaggtacctaaaag-tacaccattgcatcaataattctattcatcttatatgaattttgatttccttcaatg-tcagAAACTAGGGGATTCGGTACTTCGGCCATTTCTACAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29670150|gb|CB666425.1|CB666425
EST:     CCCCAACTTTTATCAATGAGCTTCTCTTTGCTAATTTTGAGTCGATGCAG                         AAACTTGGGGATTCAGTACTTCGGCCATTTCTCCAG
genomic: CCCCAACTTTTATCAATGAGCTTCTCTTTGCTAATTTTGAGTCGATGCAGgtaacctcag ... caatggccagAAACTTGGGGATTCAGTACTTCGGCCATTTCTCCAG
EST: gi|29670151|gb|CB666426.1|CB666426
EST:     CCCCAACTTTTATCAATGAGCTTCTCTTTGCTAATTTTGAGTCGATGCAG                         AAACTTGGGGATTCAGTACTTCGGCCATTTCTCCAG
genomic: CCCCAACTTTTATCAATGAGCTTCTCTTTGCTAATTTTGAGTCGATGCAGgtaacctcag ... caatggccagAAACTTGGGGATTCAGTACTTCGGCCATTTCTCCAG
EST: gi|29677474|gb|CB673749.1|CB673749
EST:     CCCCAACTTTTATCAATGAGCTTCTCTTTGCTAATTTTGAGTCGATGCAG                         AAACTTGGGGATTCAGTACTTCGGCCATTTCTCCAG
genomic: CCCCAACTTTTATCAATGAGCTTCTCTTTGCTAATTTTGAGTCGATGCAGgtaacctcag ... caatggccagAAACTTGGGGATTCAGTACTTCGGCCATTTCTCCAG
EST: gi|88847633|gb|CI018324.1|CI018324
EST:     AGTCGATGCAG                         AAACTTGGGGATTCAGTACTTCGGCCATTTCTCCAG
genomic: AGTCGATGCAGgtaacctcag ... caatggccagAAACTTGGGGATTCAGTACTTCGGCCATTTCTCCAG
EST: gi|88841109|gb|CI001071.1|CI001071
EST:     CCCCAACTTTTATCAATGAGCTTCTCTTTGCTAATTTTGAGTCGATGCAG                         AAACTTGGGGATTCAGTACTTCGGCCATTTCTCCAG
genomic: CCCCAACTTTTATCAATGAGCTTCTCTTTGCTAATTTTGAGTCGATGCAGgtaacctcag ... caatggccagAAACTTGGGGATTCAGTACTTCGGCCATTTCTCCAG
EST: gi|29679962|gb|CB676237.1|CB676237
EST:     CCCCAACTTTTATCAATGAGCTTCTCTTTGCTAATTTTGAGTCGATGCAG                         AAACTTGGGGATTCAGTACTTCGGCCATTTCTCCAG
genomic: CCCCAACTTTTATCAATGAGCTTCTCTTTGCTAATTTTGAGTCGATGCAGgtaacctcag ... caatggccagAAACTTGGGGATTCAGTACTTCGGCCATTTCTCCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ataccatcatttcagatttttttttatctgattagttatttcatacaatggccagAAACTTGGGGATTCAGTACTTCGGCCATTTCTCCAG
                         atctgat  putative branch site (score: 4)
               atttttttttatctga  TA-rich tract