Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtccacctaaatatgcttcttagggatgctactgaattattcttcccttgtttgttacggtccttacattttgagcaagtgatatttcatcctttggcagGTCCAGCCGCATTTAGACCGCGTGTCCATGCAACCTCAGTGTATAGTCCATTAGTCGAAAATGGGCGTCCTGTACTACAAGGGCTTTTGGCTGTCGATAT

Basic information

species Oryza sativa
transcript LOC_Os08g22864.2
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g22864.1 (Oryza sativa), 3'ss of exon 15
lower sequence: GRMZM2G327394_T01 (Zea mays), 3'ss of exon 15
----gtccacctaaat--atgcttcttagggatgctactgaattattcttcccttgtttgttacggtccttacattttgagcaagtgatatttcatcctttggcagGTCCAGCCGCATTTAGACCGCGTGTCCATGCAACCTCAGTGTATAGTCCATTAGTCGAAAATGGGCGTCCTGTACTACAAGGGCTTTTGGCTGTCGATAT
    || ||   |  |  ||     ||||  |||      ||  ||| || | |  ||| | |      ||  |   | ||    | |   | |||| ||||  ||||||||| ||||||||||| ||||| |||||||| ||||  |||||| |||  || |||  ||| || ||||| || ||||||||| | ||  | |||||
ttgagttcaaagacttcaataacatttagtaatggctgcaaaaaattattacatgctttctcata---tttgaa---taagtttattaccatgcatcttttgatagGTCCAGCAGCATTTAGACCACGTGTACATGCAACATCAGCATATAGTTCATCGGTGGAACTTGGACGCCCTGTGCTTCAAGGGCTTCTCGCCATTGATAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58695402|gb|CK084089.1|CK084089
EST:     GCCAGCAATATTTGTAGATTACCGAAAATGTGTTCAACAGGCTATATCTA                         GTCCAGCCGCATTTA-ACCGCGTGTCCATGCAACCTCAGTGTATAGTCCAT
genomic: GCCAGCAATATTTGTAGATTACCGAAAATGTGTTCAACAGGCTATATCTAgtaagttatc ... cctttggcagGTCCAGCCGCATTTAGACCGCGTGTCCATGCAACCTCAGTGTATAGTCCAT
EST: gi|58669478|gb|CK058164.1|CK058164
EST:     GCCAGCAATATTTGTAGATTACCGAAAATGTGTTCAACAGGCTATATCTA                         GTCCAGCCGCATTTAGACCGCGTGTCCATGC
genomic: GCCAGCAATATTTGTAGATTACCGAAAATGTGTTCAACAGGCTATATCTAgtaagttatc ... cctttggcagGTCCAGCCGCATTTAGACCGCGTGTCCATGC
EST: gi|58691060|gb|CK079747.1|CK079747
EST:     GCCAGCAATATTTGTAGATTACCGAAAATGTGTTCAACAGGCTATATCTA                         GTCCAGCCGCATTTAGACCGCGTGTCCATGCAACCTCAGTGTATAGTCCAT
genomic: GCCAGCAATATTTGTAGATTACCGAAAATGTGTTCAACAGGCTATATCTAgtaagttatc ... cctttggcagGTCCAGCCGCATTTAGACCGCGTGTCCATGCAACCTCAGTGTATAGTCCAT
EST: gi|58677228|gb|CK065915.1|CK065915
EST:     GCCAGCAATATTTGTAGATTACCGAAAATGTGTTCAACAGGCTATATCTA                         GTCCAGCCGCATTTAGACCGCGTGTCCATGCAACCTCAGTGTATAGTCCAT
genomic: GCCAGCAATATTTGTAGATTACCGAAAATGTGTTCAACAGGCTATATCTAgtaagttatc ... cctttggcagGTCCAGCCGCATTTAGACCGCGTGTCCATGCAACCTCAGTGTATAGTCCAT
EST: gi|58654931|gb|CK043611.1|CK043611
EST:     GCCAGCAATATTTGTAGATTACCGAAAATGTGTTCAACAGGCTATATCTA                         GTCCAGCCGCATTTAGACCGCGTGTCCATGCAACCTCAGTGTATAGTCCAT
genomic: GCCAGCAATATTTGTAGATTACCGAAAATGTGTTCAACAGGCTATATCTAgtaagttatc ... cctttggcagGTCCAGCCGCATTTAGACCGCGTGTCCATGCAACCTCAGTGTATAGTCCAT
EST: gi|29665535|gb|CB661810.1|CB661810
EST:     GCCAGCAATATTTGTAGATTACCGAAAATGTGTTCAACAGGCTATATCTA                         GTCCAGCCGCATTTAGACCGCGTGTCCATGCAACCTCAGTGTATAGTCCAT
genomic: GCCAGCAATATTTGTAGATTACCGAAAATGTGTTCAACAGGCTATATCTAgtaagttatc ... cctttggcagGTCCAGCCGCATTTAGACCGCGTGTCCATGCAACCTCAGTGTATAGTCCAT
EST: gi|218502076|gb|FG960994.1|FG960994
EST:     GCCAGCAATATTTGTAGATTACCGAAAATGTGTTCAACAGGCTATATCTA                         GTCCAGCCGCATTTAGACCGCGTGTCCATGCAACCTCAGTGTATAGTCCAT
genomic: GCCAGCAATATTTGTAGATTACCGAAAATGTGTTCAACAGGCTATATCTAgtaagttatc ... cctttggcagGTCCAGCCGCATTTAGACCGCGTGTCCATGCAACCTCAGTGTATAGTCCAT
EST: gi|58610277|gb|CK038129.1|CK038129
EST:     GCCAGCAATATTTGTAGATTACCGAAAATGTGTTCAACAGGCTATATCTA                         GTCCAGCCGCATTTAGACCGCGTGTCCATGCAACCTCAGTGTATAGTCCAT
genomic: GCCAGCAATATTTGTAGATTACCGAAAATGTGTTCAACAGGCTATATCTAgtaagttatc ... cctttggcagGTCCAGCCGCATTTAGACCGCGTGTCCATGCAACCTCAGTGTATAGTCCAT
EST: gi|58672488|gb|CK061174.1|CK061174
EST:     CCAGCAATATTTGTAGATTNACCGAAAATGTGTTCAACAGGCTATATCTA                         GTCCAGCCGCATTTAGACCGCGTGTCCATGCAACCTCAGTGTATAGTCCAT
genomic: CCAGCAATATTTGTAGATT-ACCGAAAATGTGTTCAACAGGCTATATCTAgtaagttatc ... cctttggcagGTCCAGCCGCATTTAGACCGCGTGTCCATGCAACCTCAGTGTATAGTCCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccttgtttgttacggtccttacattttgagcaagtgatatttcatcctttggcagGTCCAGCCGCATTTAGACCGCGTGTCCATGCAACCTCAGTGTATAGTCCATTAGTCGAAAATGGGCGTCCTGTACTACAAGGGCTTTTGGCTGTCGATAT
               tccttac  putative branch site (score: 2)
                                       tttcatccttt  putative PPT
                  ttacatttt  TA-rich tract