1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
...cagcatcctacggaacaatatgtgaataactgatggttatggcttgatcctcagcatggttgtaatgttgcatatctttctcttttttttttttttgcagAGACCAGAAAAGTACTTAGGTGATATTGAAACCTGGAACAAAGCAGAGCAACAGCTGACAGAAGCCTTAAATGAGTTTGGAAAGCCATGGCAG
species | Oryza sativa |
transcript | LOC_Os08g19850.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: GAGATATTTGGATTTAAATATGAATTGAAGCTATCAACG ACACCAGAAAAGTACTTAGGTGATATTGAAACCTGGAACAAAGCAGAGCAAEST: gi|2311510|gb|C27665.1|C27665
genomic: GAGATATTTGGATTTAAATATGAATTGGAGCTATCAACGgtaatcatct ... ttttttgcagAGACCAGAAAAGTACTTAGGTGATATTGAAACCTGGAACAAAGCAGAGCAA
EST: ATTATGTTTACGAGATATTTGGATTTAAATATGAATTGGAGCTATCAACG AGACCAGAAAAGTACTTAGGTGATATTGAAACCTGGAACAAAGCAGAN-AAEST: gi|29626606|gb|CB631617.1|CB631617
genomic: ATTATGTTTACGAGATATTTGGATTTAAATATGAATTGGAGCTATCAACGgtaatcatct ... ttttttgcagAGACCAGAAAAGTACTTAGGTGATATTGAAACCTGGAACAAAGCAGAGCAA
EST: ATTATGTTTACGAGATATTTGGATTTAAATATGAATTGGAGCTATCAACG AGACCAGAAAAGTACTTAGGTGATATTGAAACCTGGAACAAAGCAGAGCAAEST: gi|38479117|gb|CF963250.1|CF963250
genomic: ATTATGTTTACGAGATATTTGGATTTAAATATGAATTGGAGCTATCAACGgtaatcatct ... ttttttgcagAGACCAGAAAAGTACTTAGGTGATATTGAAACCTGGAACAAAGCAGAGCAA
EST: TATTTGGATTTAAATATGAATTGGAGCTATCAACG AGACCAGAAAAGTACTTAGGT--TATTGAAACCTGGAGACAAAGCAGAGCAEST: gi|29622569|gb|CB627580.1|CB627580
genomic: TATTTGGATTTAAATATGAATTGGAGCTATCAACGgtaatcatct ... ttttttgcagAGACCAGAAAAGTACTTAGGTGATATTGAAACCTGGA-ACAAAGCAGAGCA
EST: ATTATGTTTACGAGATATTTGGA-TTAAATATGAATTGGAGCTATCAACG AGACCAGAAAAGTACTTAGGTGATATTGAAACCTGGAACAAAGCAGAGCAAEST: gi|88376802|gb|CI639127.1|CI639127
genomic: ATTATGTTTACGAGATATTTGGATTTAAATATGAATTGGAGCTATCAACGgtaatcatct ... ttttttgcagAGACCAGAAAAGTACTTAGGTGATATTGAAACCTGGAACAAAGCAGAGCAA
EST: ATTATGTTTACGAGATATTTGGATTTAAATATGAATTGGAGCTATCAACG AGACCAGAAAAGTACTTAGGTGATATTGAAACCTGGAACAAAGCAGAGCAAEST: gi|8956784|gb|BE230587.1|BE230587
genomic: ATTATGTTTACGAGATATTTGGATTTAAATATGAATTGGAGCTATCAACGgtaatcatct ... ttttttgcagAGACCAGAAAAGTACTTAGGTGATATTGAAACCTGGAACAAAGCAGAGCAA
EST: GAGATATTTGGATTTAAATATGAATTGGAGCTATCAACG AGACCAGAAAAGTACTTAGGTGATATTGAAACCTGGAACAAAGCAGAGCAA
genomic: GAGATATTTGGATTTAAATATGAATTGGAGCTATCAACGgtaatcatct ... ttttttgcagAGACCAGAAAAGTACTTAGGTGATATTGAAACCTGGAACAAAGCAGAGCAA
gatcctcagcatggttgtaatgttgcatatctttctcttttttttttttttgcagAGACCAGAAAAGTACTTAGGTGATATTGAAACCTGGAACAAAGCAGAGCAACAGCTGACAGAAGCCTTAAATGAGTTTGGAAAGCCATGGCAG
gcttgat putative branch site (score: 62)
tgttgcatatctttct putative PPT
atatctttctcttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cagcatcctacggaacaatatgtgaataactgatggttatggcttgatcctcagcatggttgtaatgttgcatatctttctcttttttttttttttgcagAGACCAGAAAAGTACTTAGGTGATATTGAAACCTGGAACAAAGCAGAGCAACAGCTGACAGAAGCCTTAAATGAGTTTGGAAAGCCATGGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
-agcatcc
- - - - - - gaacaat
- - - - - - - - - - - - - - -ctgatgg
- - - - - - - - - - - - - - - - - - - -tggcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - agcatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtaatg