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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacttatgacatttggctatacttccataagtgtttaatattaacaattttttctcacaacttttttcaagtcaattatgtccacagTATTCTACCTCCAGGGCTAAACTGCCTCCAGAAAGACACTCCATGTTTACGAGGTTCTCCAGAAT

Basic information

species Oryza sativa
transcript LOC_Os08g10320.3
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29630668|gb|CB635677.1|CB635677
EST:     GAATTTGGTGGCAAACAACTTTGATCTTGGCAGCACCAACAACGG                         TATTCTACCTCCAGGGCTAAACTGCCTCCAGAAAGACACTCCATGTTTACG
genomic: GAATTTGGTGGCAAACAACTTTGATCTTGGCAGCACCAACAACGGgtacttatga ... atgtccacagTATTCTACCTCCAGGGCTAAACTGCCTCCAGAAAGACACTCCATGTTTACG
EST: gi|29644124|gb|CB649131.1|CB649131
EST:     GAATTTGGTGGCAAACAACTTTGATCTTGGCAGCACCAACAACGG                         TATTCTACCTCCAGGGCTAAACTGCCTCCAGAAAGACACTCCATGTTTACG
genomic: GAATTTGGTGGCAAACAACTTTGATCTTGGCAGCACCAACAACGGgtacttatga ... atgtccacagTATTCTACCTCCAGGGCTAAACTGCCTCCAGAAAGACACTCCATGTTTACG
EST: gi|88449939|gb|CI572070.1|CI572070
EST:     GAATTTGGTGGCAAACAACTTTGATCTTGGCAGCACCAACAACGG                         TATTCTACCTCCAGGGCTAAACTGCCTCCAGAAAGACACTCCATGTTTACG
genomic: GAATTTGGTGGCAAACAACTTTGATCTTGGCAGCACCAACAACGGgtacttatga ... atgtccacagTATTCTACCTCCAGGGCTAAACTGCCTCCAGAAAGACACTCCATGTTTACG
EST: gi|88431028|gb|CI572018.1|CI572018
EST:     GAATTTGGTGGCAAACAACTTTGATCTTGGCAGCACCAACAACGG                         TATTCTACCTCCAGGGCTAAACTGCCTCCAGAAAGACACTCCATGTTTACG
genomic: GAATTTGGTGGCAAACAACTTTGATCTTGGCAGCACCAACAACGGgtacttatga ... atgtccacagTATTCTACCTCCAGGGCTAAACTGCCTCCAGAAAGACACTCCATGTTTACG
EST: gi|29630383|gb|CB635392.1|CB635392
EST:     GAATTTGGTGGCAAACAACTTTGATCTTGGCAGCACCAACAACGG                         TATTCTACCTCCAGGGCTAAACTGCCTCCAGAAAGACACTCCATGTTTACG
genomic: GAATTTGGTGGCAAACAACTTTGATCTTGGCAGCACCAACAACGGgtacttatga ... atgtccacagTATTCTACCTCCAGGGCTAAACTGCCTCCAGAAAGACACTCCATGTTTACG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttaatattaacaattttttctcacaacttttttcaagtcaattatgtccacagTATTCTACCTCCAGGGCTAAACTGCCTCCAGAAAGACACTCCATGTTTACGAGGTTCTCCAGAAT
     atattaacaatttttt  TA-rich tract