1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...gtttatagaaaagcaaaggcaccgatgagtaattgtctacttgcaatgtaaaaaaatcccatttcgtccactgatggcacaacaacgttctgtgtgacagCAGGGCCCCGCAGGTGCATCGCATTGGAGAAGCATCAAGCAGCACGTGCTACCTCATGGTTCTTCAAGGCCCTTCTCCCGGAAGCACTCCATGGACGCCT
species | Oryza sativa |
transcript | LOC_Os07g46450.2 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: TTGATATGAACCTTGCTTTCTGTAATCAGGAGAAGAAGCAAAGGAATGAG --GG-CCCCGCAGGTGCATCGCATTGGAGAAGCATCAAGCAGCACGTGCTAEST: gi|58666427|gb|CK055113.1|CK055113
genomic: TTGATATGAACCTTGCTTTCTGTAATCAGGAGAAGAAGCAAAGGAATGAGgttagctaaa ... tgtgtgacagCAGGGCCCCGCAGGTGCATCGCATTGGAGAAGCATCAAGCAGCACGTGCTA
EST: TTGATATGAACCTTGCTTTCTGTAATCAGGAGAAGAAGCAAAGGAATGAG --GG-CCCCGCAGGTGCATCGCATTGGAGAAGCATCAAGCAGCACGTGCTA
genomic: TTGATATGAACCTTGCTTTCTGTAATCAGGAGAAGAAGCAAAGGAATGAGgttagctaaa ... tgtgtgacagCAGGGCCCCGCAGGTGCATCGCATTGGAGAAGCATCAAGCAGCACGTGCTA
atgtaaaaaaatcccatttcgtccactgatggcacaacaacgttctgtgtgacagCAGGGCCCCGCAGGTGCATCGCATTGGAGAAGCATCAAGCAGCACGTGCTACCTCATGGTTCTTCAAGGCCCTTCTCCCGGAAGCACTCCATGGACGCCT
cactgat putative branch site (score: 3)
aaaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttatagaaaagcaaaggcaccgatgagtaattgtctacttgcaatgtaaaaaaatcccatttcgtccactgatggcacaacaacgttctgtgtgacagCAGGGCCCCGCAGGTGCATCGCATTGGAGAAGCATCAAGCAGCACGTGCTACCTCATGGTTCTTCAAGGCCCTTCTCCCGGAAGCACTCCATGGACGCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - -aaagcaa
- - - - - - - - -ggcaccg
- - - - - - - - - - - - - - - - - - - acttgca
- - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caacaac