1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...actgagggttatacatgtttgtgctgttagtgcagaaaaatagaggtgccctatttagaaaaatcagctaaaatttcgtggatgtaatttgtctttacagGTCCTTCCGTGATTACGGAGAAGCTGTCTTGAAACATTTGGAGAATGCAATCAGTAAAGATGAATATCTGTGCAAAGCACCGAAGAACTATGAAGGC
species | Oryza sativa |
transcript | LOC_Os07g26610.2 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: GTGGAGATAAGATTGAAGATTGATCAGAAT-ATGCAGATTTGAAAGGGGG GTCCTTCCGTGATTACGGAGAAGCTGTCTTGAAACATTTGGAGAATGCAATEST: gi|29660679|gb|CB656954.1|CB656954
genomic: GTGGAGATAAGATTGAAGATTGATCAGAATCATGCAGATTTGAAAGGGGGgtatgtccct ... gtctttacagGTCCTTCCGTGATTACGGAGAAGCTGTCTTGAAACATTTGGAGAATGCAAT
EST: GTGGAGATAAGATTGAAGATTGATCAGAATCATGCAGATTTGAAAGGGGG GTCCTTCCGTGATTACGGAGAAGCTGTCTTGAAACATTTGGAGAATGCAATEST: gi|89186475|gb|CI048147.1|CI048147
genomic: GTGGAGATAAGATTGAAGATTGATCAGAATCATGCAGATTTGAAAGGGGGgtatgtccct ... gtctttacagGTCCTTCCGTGATTACGGAGAAGCTGTCTTGAAACATTTGGAGAATGCAAT
EST: GTGGAGATAAGATTGAAGATTGATCAGAATCATGCAGATTTGAAAGGGGG GTCCTTCCGTGATTACGGAGAAGCTGTCTTGAAACATTTGGAGAATGCAATEST: gi|86892585|gb|CI312008.1|CI312008
genomic: GTGGAGATAAGATTGAAGATTGATCAGAATCATGCAGATTTGAAAGGGGGgtatgtccct ... gtctttacagGTCCTTCCGTGATTACGGAGAAGCTGTCTTGAAACATTTGGAGAATGCAAT
EST: TGGAGATAAGATTGAAGATTGATCAGAATCATGCAGATTTTGAAAGGGGG GTCCTTCCGTGATTACGGAGAAGCTGTCTTGAAACATTTGGAGAATGCAATEST: gi|86258642|gb|CI064995.1|CI064995
genomic: TGGAGATAAGATTGAAGATTGATCAGAATCATGCAGA-TTTGAAAGGGGGgtatgtccct ... gtctttacagGTCCTTCCGTGATTACGGAGAAGCTGTCTTGAAACATTTGGAGAATGCAAT
EST: GAGATAAGATTGAAGATTGATCAGAATCATGCAGATTTGAAAGGGGG GTCCTTCCGTGATTACGGAGAAGCTGTCTTGAAACATTTGGAGAATGCAAT
genomic: GAGATAAGATTGAAGATTGATCAGAATCATGCAGATTTGAAAGGGGGgtatgtccct ... gtctttacagGTCCTTCCGTGATTACGGAGAAGCTGTCTTGAAACATTTGGAGAATGCAAT
gtgccctatttagaaaaatcagctaaaatttcgtggatgtaatttgtctttacagGTCCTTCCGTGATTACGGAGAAGCTGTCTTGAAACATTTGGAGAATGCAATCAGTAAAGATGAATATCTGTGCAAAGCACCGAAGAACTATGAAGGC
agctaaa putative branch site (score: 3)
tttgtcttt putative PPT
tatttagaaaaatca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actgagggttatacatgtttgtgctgttagtgcagaaaaatagaggtgccctatttagaaaaatcagctaaaatttcgtggatgtaatttgtctttacagGTCCTTCCGTGATTACGGAGAAGCTGTCTTGAAACATTTGGAGAATGCAATCAGTAAAGATGAATATCTGTGCAAAGCACCGAAGAACTATGAAGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - atacatg
- - - - - - - - - - -tgctgtt
- - - - - - - - - - - - - - - - -agaaaaa
- - - - - - - - - - - - - - - - - -aaaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agctaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtggatg