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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagtgcaactgcaacagcttggtttatttccatatacatggcatttaggttattatgtgatcatggtgctgataaaacaatcattttcagGGAATGATTCTTCTGTGGGATTCTGATTCAGGACTTGCCCAACTTGACAAGTACCTGCACAGCAATGATATTCATGTTGTTGCTGGGGCTTTGCTAGGGA

Basic information

species Oryza sativa
transcript LOC_Os06g48640.2
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29623913|gb|CB628924.1|CB628924
EST:     GGTTATTCAAGAACAAGGAACATGGGAAAGCTAGTGCAGCCGCTAGCCTG                         GGAATGATTCTTCTGTGGGATTCTGATTCAGGACTTGCCCAACTTGACAAG
genomic: GGTTATTCAAGAACAAGGAACATGGGAAAGCTAGTGCAGCCGCTAGCCTGgtagtgcaac ... tcattttcagGGAATGATTCTTCTGTGGGATTCTGATTCAGGACTTGCCCAACTTGACAAG
EST: gi|25797752|gb|CA753713.1|CA753713
EST:     GGTTATTCAAGAACAAGGAACATGGGAAAGCTAGTGCAGCCGCTAGCCTG                         GGAATGATTCTTCTGTGGGATTCTGATTCAGGACTTGCCCAACTTGACAAG
genomic: GGTTATTCAAGAACAAGGAACATGGGAAAGCTAGTGCAGCCGCTAGCCTGgtagtgcaac ... tcattttcagGGAATGATTCTTCTGTGGGATTCTGATTCAGGACTTGCCCAACTTGACAAG
EST: gi|29673567|gb|CB669842.1|CB669842
EST:     GGTTATTCAAGAACAAGGAACATGGGAAAGCTAGTGCAGCCGCTAGCCTG                         GGAATGATTCTTCTGTGGGATTCTGATTCAGGACTTGCCCAACTTGACAAG
genomic: GGTTATTCAAGAACAAGGAACATGGGAAAGCTAGTGCAGCCGCTAGCCTGgtagtgcaac ... tcattttcagGGAATGATTCTTCTGTGGGATTCTGATTCAGGACTTGCCCAACTTGACAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acatggcatttaggttattatgtgatcatggtgctgataaaacaatcattttcagGGAATGATTCTTCTGTGGGATTCTGATTCAGGACTTGCCCAACTTGACAAGTACCTGCACAGCAATGATATTCATGTTGTTGCTGGGGCTTTGCTAGGGA
                               tgctgat  putative branch site (score: 3)
                                             tcattttc  putative PPT
                                    ataaaacaatcatttt  TA-rich tract