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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgaagcacttctattatcaacgctaacagtaatgtgatttatggacctttacccaaaatctcatttcatctatcatccattttcagGGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGAACCATTACATCAGCCCTG

Basic information

species Oryza sativa
transcript LOC_Os06g13810.1
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88568762|gb|CI499479.1|CI499479
EST:     AAGCCAGTGATCAAGAGGGCTATGGTGGAACTTGACG                         GGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGANTGGTCCCTCGAGA
genomic: AAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACGgtacgaagca ... ccattttcagGGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
EST: gi|89184067|gb|CI046632.1|CI046632
EST:     GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG                         GGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
genomic: GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACGgtacgaagca ... ccattttcagGGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
EST: gi|88503085|gb|CI430591.1|CI430591
EST:     GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTAG-CG                         GGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAG
genomic: GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTT-GACGgtacgaagca ... ccattttcagGGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAG
EST: gi|88443149|gb|CI546721.1|CI546721
EST:     GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG                         GGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
genomic: GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACGgtacgaagca ... ccattttcagGGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
EST: gi|88962496|gb|CI097648.1|CI097648
EST:     ACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG                         GGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
genomic: ACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACGgtacgaagca ... ccattttcagGGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
EST: gi|88248905|gb|CI247989.1|CI247989
EST:     GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG                         GGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
genomic: GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACGgtacgaagca ... ccattttcagGGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
EST: gi|89180255|gb|CI044534.1|CI044534
EST:     GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG                         GGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
genomic: GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACGgtacgaagca ... ccattttcagGGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
EST: gi|33687067|gb|CF315306.1|CF315306
EST:     GCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG                         GGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
genomic: GCCAGTGATCAAGAAGGCTATGGTGGAACTTGACGgtacgaagca ... ccattttcagGGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
EST: gi|86255558|gb|CI065235.1|CI065235
EST:     GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG                         GGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
genomic: GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACGgtacgaagca ... ccattttcagGGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
EST: gi|88298292|gb|CI561085.1|CI561085
EST:     GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG                         GGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
genomic: GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACGgtacgaagca ... ccattttcagGGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
EST: gi|157650149|gb|EX449783.1|EX449783
EST:     GTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG                         GGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
genomic: GTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACGgtacgaagca ... ccattttcagGGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
EST: gi|88384752|gb|CI556630.1|CI556630
EST:     GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG                         GGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
genomic: GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACGgtacgaagca ... ccattttcagGGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
EST: gi|88456553|gb|CI547269.1|CI547269
EST:     TGATCAAGAAGGCTATGGTGGAACTTGACG                         GGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
genomic: TGATCAAGAAGGCTATGGTGGAACTTGACGgtacgaagca ... ccattttcagGGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
EST: gi|89162035|gb|CI103571.1|CI103571
EST:     GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG                         GGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
genomic: GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACGgtacgaagca ... ccattttcagGGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
EST: gi|88289703|gb|CI522836.1|CI522836
EST:     GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTG-AACNTTGACG                         GGGCACCGTGTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAG
genomic: GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAAC-TTGACGgtacgaagca ... ccattttcagGGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAG
EST: gi|86488059|gb|CI130692.1|CI130692
EST:     GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG                         GGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
genomic: GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACGgtacgaagca ... ccattttcagGGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
EST: gi|88957467|gb|CI095408.1|CI095408
EST:     GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG                         GGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
genomic: GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACGgtacgaagca ... ccattttcagGGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
EST: gi|218492354|gb|FG951898.1|FG951898
EST:     GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG                         GGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
genomic: GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACGgtacgaagca ... ccattttcagGGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
EST: gi|89179882|gb|CI044161.1|CI044161
EST:     GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG                         GGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
genomic: GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACGgtacgaagca ... ccattttcagGGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
EST: gi|58677751|gb|CK066438.1|CK066438
EST:     GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG                         GGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
genomic: GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACGgtacgaagca ... ccattttcagGGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
EST: gi|88247475|gb|CI247324.1|CI247324
EST:     GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG                         GGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
genomic: GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACGgtacgaagca ... ccattttcagGGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
EST: gi|88438790|gb|CI546272.1|CI546272
EST:     GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG                         GGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
genomic: GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACGgtacgaagca ... ccattttcagGGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
EST: gi|86486432|gb|CI129065.1|CI129065
EST:     GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG                         GGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
genomic: GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACGgtacgaagca ... ccattttcagGGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
EST: gi|29678699|gb|CB674974.1|CB674974
EST:     GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG                         GGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
genomic: GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACGgtacgaagca ... ccattttcagGGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
EST: gi|29632620|gb|CB637629.1|CB637629
EST:     GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG                         GGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
genomic: GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACGgtacgaagca ... ccattttcagGGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
EST: gi|86435722|gb|CI106955.1|CI106955
EST:     GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG                         GGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
genomic: GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACGgtacgaagca ... ccattttcagGGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
EST: gi|88563084|gb|CI493801.1|CI493801
EST:     CACGGAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGGCG                         GGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
genomic: CACGGAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACGgtacgaagca ... ccattttcagGGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
EST: gi|89194206|gb|CI116643.1|CI116643
EST:     GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG                         GGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
genomic: GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACGgtacgaagca ... ccattttcagGGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
EST: gi|89198488|gb|CI007548.1|CI007548
EST:     GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG                         GGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
genomic: GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACGgtacgaagca ... ccattttcagGGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
EST: gi|88849729|gb|CI089835.1|CI089835
EST:     GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG                         GGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
genomic: GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACGgtacgaagca ... ccattttcagGGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
EST: gi|88957444|gb|CI095385.1|CI095385
EST:     GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG                         GGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
genomic: GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACGgtacgaagca ... ccattttcagGGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
EST: gi|13806214|gb|AU181418.1|AU181418
EST:     GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG                         GGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
genomic: GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACGgtacgaagca ... ccattttcagGGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
EST: gi|88205596|gb|CI205445.1|CI205445
EST:     GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAAC-TGTACG                         GGGCACCGTTTAAGAAGTTTGCTTCATTGTCGAGATGAGTGGTCCCTCAA
genomic: GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTG-ACGgtacgaagca ... ccattttcagGGGCACCGTTTAAGAAGTTTGCTTCATTG-CGAGATGAGTGGTCCCTCAA
EST: gi|58687019|gb|CK075706.1|CK075706
EST:     GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG                         GGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
genomic: GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACGgtacgaagca ... ccattttcagGGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
EST: gi|89180424|gb|CI044703.1|CI044703
EST:     GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG                         GGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
genomic: GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACGgtacgaagca ... ccattttcagGGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
EST: gi|86261017|gb|CI066692.1|CI066692
EST:     GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG                         GGGCACCGTTTAAGAAGTNTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
genomic: GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACGgtacgaagca ... ccattttcagGGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
EST: gi|163927712|gb|EG712472.1|EG712472
EST:     AGTGATCAAGAAGGCTATGGTGGAACTTGACG                         GGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
genomic: AGTGATCAAGAAGGCTATGGTGGAACTTGACGgtacgaagca ... ccattttcagGGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
EST: gi|29689205|gb|CB685480.1|CB685480
EST:     GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG                         GGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
genomic: GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACGgtacgaagca ... ccattttcagGGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
EST: gi|58684244|gb|CK072931.1|CK072931
EST:     GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG                         GGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
genomic: GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACGgtacgaagca ... ccattttcagGGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
EST: gi|88445250|gb|CI552303.1|CI552303
EST:     TATGGTGGAACTTGACG                         GGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
genomic: TATGGTGGAACTTGACGgtacgaagca ... ccattttcagGGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
EST: gi|89183317|gb|CI045882.1|CI045882
EST:     GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG                         GGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
genomic: GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACGgtacgaagca ... ccattttcagGGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
EST: gi|88850841|gb|CI096231.1|CI096231
EST:     GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG                         GGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
genomic: GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACGgtacgaagca ... ccattttcagGGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
EST: gi|88507469|gb|CI434975.1|CI434975
EST:     TACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG                         GGGCACCNTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
genomic: TACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACGgtacgaagca ... ccattttcagGGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
EST: gi|88516855|gb|CI442511.1|CI442511
EST:     AGTACGAGCCAGTGATCAAGAAGGGTATGGTGGAACTTGACG                         GGGCACCGTTTAAGGAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
genomic: AGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACGgtacgaagca ... ccattttcagGGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
EST: gi|88437922|gb|CI536081.1|CI536081
EST:     GAAAGTACAAGCCA-TAGATCAAGAAGGCTATGGTGGAACTTTAGCG                         GGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAG
genomic: GAAAGTACAAGCCAGT-GATCAAGAAGGCTATGGTGGAACTTGA-CGgtacgaagca ... ccattttcagGGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAG
EST: gi|55431802|gb|CV728921.1|CV728921
EST:     GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG                         GGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
genomic: GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACGgtacgaagca ... ccattttcagGGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
EST: gi|88246487|gb|CI246336.1|CI246336
EST:     GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG                         GGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
genomic: GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACGgtacgaagca ... ccattttcagGGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
EST: gi|88434872|gb|CI549069.1|CI549069
EST:     GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG                         GGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
genomic: GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACGgtacgaagca ... ccattttcagGGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
EST: gi|2799286|gb|AA753811.1|AA753811
EST:     ACGGAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG                         GGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
genomic: ACGGAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACGgtacgaagca ... ccattttcagGGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
EST: gi|86433428|gb|CI093771.1|CI093771
EST:     GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG                         GGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
genomic: GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACGgtacgaagca ... ccattttcagGGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
EST: gi|33687066|gb|CF315305.1|CF315305
EST:     GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG                         GGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
genomic: GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACGgtacgaagca ... ccattttcagGGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
EST: gi|88442444|gb|CI544011.1|CI544011
EST:     CAAGAAGGCTATGGTGGAACTTGACG                         GGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
genomic: CAAGAAGGCTATGGTGGAACTTGACGgtacgaagca ... ccattttcagGGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
EST: gi|88849084|gb|CI087606.1|CI087606
EST:     GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG                         GGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
genomic: GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACGgtacgaagca ... ccattttcagGGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
EST: gi|13807248|gb|AU181879.1|AU181879
EST:     CAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG                         GGGCNCCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
genomic: CAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACGgtacgaagca ... ccattttcagGGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
EST: gi|58672321|gb|CK061007.1|CK061007
EST:     GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG                         GGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
genomic: GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACGgtacgaagca ... ccattttcagGGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
EST: gi|88292068|gb|CI532660.1|CI532660
EST:     GGAAGTACAAGCCAGTGATCAAGGAGGCTATGGTGGAACTTGACG                         GGGCACCGTTTAAGAAGTGTGCTTCATTGGGAGATGAGTGGTCCCTCAAGA
genomic: GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACGgtacgaagca ... ccattttcagGGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
EST: gi|88247683|gb|CI247532.1|CI247532
EST:     GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG                         GGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
genomic: GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACGgtacgaagca ... ccattttcagGGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
EST: gi|428916|gb|D25072.1|D25072
EST:     GAAAGTACAAGCCAGTTATCAAGAAGGCTATGGTGGA-CTTGACG                         GGGCAC-GTTTAAGAAGTTTGCTTCATTGCGA-ATGAGTNGTCCCTCAAGA
genomic: GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACGgtacgaagca ... ccattttcagGGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
EST: gi|88374935|gb|CI521001.1|CI521001
EST:     TGATCAANAAGGCTATGGTGGAACTTGACG                         GGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
genomic: TGATCAAGAAGGCTATGGTGGAACTTGACGgtacgaagca ... ccattttcagGGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
EST: gi|89173495|gb|CI041388.1|CI041388
EST:     GCACGGAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG                         GGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
genomic: GCACGGAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACGgtacgaagca ... ccattttcagGGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
EST: gi|88442178|gb|CI560419.1|CI560419
EST:     TACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG                         GGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
genomic: TACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACGgtacgaagca ... ccattttcagGGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
EST: gi|58587615|gb|CF985923.1|CF985923
EST:     GGAACTTGACG                         GGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCGCTGCAAG
genomic: GGAACTTGACGgtacgaagca ... ccattttcagGGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCT-CAAG
EST: gi|218497895|gb|FG966087.1|FG966087
EST:     GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG                         GGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
genomic: GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACGgtacgaagca ... ccattttcagGGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
EST: gi|8527563|gb|AU092378.1|AU092378
EST:     GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG                         GGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
genomic: GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACGgtacgaagca ... ccattttcagGGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
EST: gi|88197484|gb|CI197186.1|CI197186
EST:     GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG                         GGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
genomic: GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACGgtacgaagca ... ccattttcagGGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
EST: gi|88249646|gb|CI249495.1|CI249495
EST:     GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG                         GGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
genomic: GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACGgtacgaagca ... ccattttcagGGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
EST: gi|38481421|gb|CF965510.1|CF965510
EST:     GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG                         GGGCAGCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
genomic: GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACGgtacgaagca ... ccattttcagGGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
EST: gi|163927439|gb|EG713879.1|EG713879
EST:     GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG                         GGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
genomic: GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACGgtacgaagca ... ccattttcagGGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
EST: gi|29686237|gb|CB682512.1|CB682512
EST:     GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG                         GGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
genomic: GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACGgtacgaagca ... ccattttcagGGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
EST: gi|89179985|gb|CI044264.1|CI044264
EST:     GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG                         GGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
genomic: GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACGgtacgaagca ... ccattttcagGGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
EST: gi|88444188|gb|CI554905.1|CI554905
EST:     GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG                         GGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
genomic: GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACGgtacgaagca ... ccattttcagGGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
EST: gi|86846305|gb|CI339881.1|CI339881
EST:     GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGG-ACTTGACG                         GGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
genomic: GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACGgtacgaagca ... ccattttcagGGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
EST: gi|86854109|gb|CI252100.1|CI252100
EST:     GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG                         GGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
genomic: GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACGgtacgaagca ... ccattttcagGGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
EST: gi|86259725|gb|CI065598.1|CI065598
EST:     ATCAAGAAGGCTATGGTGGAAC-TGAGCG                         GGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAG
genomic: ATCAAGAAGGCTATGGTGGAACTTGA-CGgtacgaagca ... ccattttcagGGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAG
EST: gi|88219371|gb|CI218931.1|CI218931
EST:     GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG                         GGGCACCGTGTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
genomic: GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACGgtacgaagca ... ccattttcagGGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
EST: gi|89189404|gb|CI048943.1|CI048943
EST:     GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG                         GGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
genomic: GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACGgtacgaagca ... ccattttcagGGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
EST: gi|88250241|gb|CI348471.1|CI348471
EST:     GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG                         GGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGGTGGTCCCTCAAG
genomic: GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACGgtacgaagca ... ccattttcagGGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGA-GTGGTCCCTCAAG
EST: gi|88255890|gb|CI353761.1|CI353761
EST:     GTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG                         GGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGGTGAGTGGTCCCTCAAGA
genomic: GTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACGgtacgaagca ... ccattttcagGGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
EST: gi|88247174|gb|CI247023.1|CI247023
EST:     GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG                         GGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
genomic: GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACGgtacgaagca ... ccattttcagGGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
EST: gi|89184848|gb|CI048404.1|CI048404
EST:     GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG                         GGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
genomic: GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACGgtacgaagca ... ccattttcagGGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
EST: gi|88852411|gb|CI374179.1|CI374179
EST:     GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGT-GAACTTGACG                         GGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
genomic: GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACGgtacgaagca ... ccattttcagGGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
EST: gi|88243281|gb|CI244403.1|CI244403
EST:     GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACG                         GGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA
genomic: GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACGgtacgaagca ... ccattttcagGGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 75 (downstream exon)
Score: 36

GAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACGgtacgaagca ... ccattttcagGGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGAACCATTACATCAGCCCTG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgtgatttatggacctttacccaaaatctcatttcatctatcatccattttcagGGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGAACCATTACATCAGCCCTG
                                            tccattttc  CT-rich tract
     atttat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtacgaagcacttctattatcaacgctaacagtaatgtgatttatggacctttacccaaaatctcatttcatctatcatccattttcagGGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGAACCATTACATCAGCCCTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC