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gttatttttctggttattactttccatagtacatgatgaacttatttatgagtttgcggtagttgtatatttgttattttgaaatatcataattgtttttttttacagCCATGCTTCTACATCCCCCCTTCACTTCGATTCAGATCAACAAACGGATATGCAGCAACACCACCATCAG
species | Oryza sativa |
transcript | LOC_Os06g02550.2 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: GTTTTGCAGCATCCCTTCTTTCAG CCATGCTTTTACATCCCCCCTTCACTTCGATTCAGATCAACAAACGGATATEST: gi|58685705|gb|CK074392.1|CK074392
genomic: GTTTTGCAGCATCCCTTCTTTCAGgttatttttc ... ttttttacagCCATGCTTCTACATCCCCCCTTCACTTCGATTCAGATCAACAAACGGATAT
EST: CACAAAGAAGGCCAACAGCGGTGGAGG-TTTGCAGCATCCCTTCTTTCAG CCATGCTTCTACATCCCCCCTTCACTTCGATTCAGATCAACAAACGGATATEST: gi|88691087|gb|CI735166.1|CI735166
genomic: CACAAAGAAGGCCAACAGCGGTGGAGGTTTTGCAGCATCCCTTCTTTCAGgttatttttc ... ttttttacagCCATGCTTCTACATCCCCCCTTCACTTCGATTCAGATCAACAAACGGATAT
EST: CACAAAGAAGGCCAACAGCGGTGGAGGTTTTGCAGCATCCCTTCTTTCAG CCATGCTTCTACATCCCCCCTTCACTTCGATTCAGATCAACAAACGGATATEST: gi|88691956|gb|CI735531.1|CI735531
genomic: CACAAAGAAGGCCAACAGCGGTGGAGGTTTTGCAGCATCCCTTCTTTCAGgttatttttc ... ttttttacagCCATGCTTCTACATCCCCCCTTCACTTCGATTCAGATCAACAAACGGATAT
EST: CACAAAGAAGGCCAACAGCGGTGGAGGTTTTGCAGCATCCCTTCTTTCAG CCATGCTTCTACATCCCCCCTTCACTTCGATTCAGATCAACAAACGGATATEST: gi|218500572|gb|FG950928.1|FG950928
genomic: CACAAAGAAGGCCAACAGCGGTGGAGGTTTTGCAGCATCCCTTCTTTCAGgttatttttc ... ttttttacagCCATGCTTCTACATCCCCCCTTCACTTCGATTCAGATCAACAAACGGATAT
EST: CACAAAGAAGGCCAACAGCGGTGGAGGTTTTGCAGCATCCCTTCTTTCAG CCATGCTTCTACATCCCCCCTTCACTTCGATTCAGATCAACAAACGGATATEST: gi|58678822|gb|CK067509.1|CK067509
genomic: CACAAAGAAGGCCAACAGCGGTGGAGGTTTTGCAGCATCCCTTCTTTCAGgttatttttc ... ttttttacagCCATGCTTCTACATCCCCCCTTCACTTCGATTCAGATCAACAAACGGATAT
EST: CACAAAGAAGGCCAACAGCGGTGGAGGTTTTGCAGCATCCCTTCTTTCAG CCATGCTTCTACATCCEST: gi|66916087|gb|CX102935.1|CX102935
genomic: CACAAAGAAGGCCAACAGCGGTGGAGGTTTTGCAGCATCCCTTCTTTCAGgttatttttc ... ttttttacagCCATGCTTCTACATCC
EST: CACAAAGAAGGCCAACAGCGGTGGAGGTTTTGCAGCATCCCTTCTTTCAG CCATGCTTCTACATCCCCCCTTCACTTCGATTCAGATCAACAAACGGATATEST: gi|29641486|gb|CB646493.1|CB646493
genomic: CACAAAGAAGGCCAACAGCGGTGGAGGTTTTGCAGCATCCCTTCTTTCAGgttatttttc ... ttttttacagCCATGCTTCTACATCCCCCCTTCACTTCGATTCAGATCAACAAACGGATAT
EST: CACAAAGAAGGCCAACAGCGGTGGAGGTTTTGCAGCATCCCTTCTTTCAG CCATGCTTCTACATCCCCCCTTCACTTCGATTCAGATCAACAAACGGATATEST: gi|58687727|gb|CK076414.1|CK076414
genomic: CACAAAGAAGGCCAACAGCGGTGGAGGTTTTGCAGCATCCCTTCTTTCAGgttatttttc ... ttttttacagCCATGCTTCTACATCCCCCCTTCACTTCGATTCAGATCAACAAACGGATAT
EST: CACAAAGAAGGCCAACAGCGGTGGAGGTTTTGCAGCATCCCTTCTTTCAG CCATCCTTCTACATCCCCCCTTCACTTCGATTCAGATCAACAAACGGATATEST: gi|58685041|gb|CK073728.1|CK073728
genomic: CACAAAGAAGGCCAACAGCGGTGGAGGTTTTGCAGCATCCCTTCTTTCAGgttatttttc ... ttttttacagCCATGCTTCTACATCCCCCCTTCACTTCGATTCAGATCAACAAACGGATAT
EST: CACAAAGAAGGCCAACAGCGGTGGAGGTTTTGCAGCATCCCTTCTTTCAG CCATGCTTCTACATCCCCCCTTCACTTCGATTCAGATCAACAAACEST: gi|29685601|gb|CB681876.1|CB681876
genomic: CACAAAGAAGGCCAACAGCGGTGGAGGTTTTGCAGCATCCCTTCTTTCAGgttatttttc ... ttttttacagCCATGCTTCTACATCCCCCCTTCACTTCGATTCAGATCAACAAAC
EST: CACAAAGAAGGCCAACAGCGGTGGAGGTTTTGCAGCATCCCTTCTTTCAG CCATGCTTCTACATCCCCCCTTCACTTCGATTCAGATCAACAAACGGATATEST: gi|88689214|gb|CI732790.1|CI732790
genomic: CACAAAGAAGGCCAACAGCGGTGGAGGTTTTGCAGCATCCCTTCTTTCAGgttatttttc ... ttttttacagCCATGCTTCTACATCCCCCCTTCACTTCGATTCAGATCAACAAACGGATAT
EST: CACAAACAAGGCCAACAGCGGTGGAGGTTTTGCAGCATCCCTTCTTTCAG CCATGCTTCTACATCCCCCCTTCACTTCGATTCAGATCAANAAACGGATATEST: gi|88691942|gb|CI735517.1|CI735517
genomic: CACAAAGAAGGCCAACAGCGGTGGAGGTTTTGCAGCATCCCTTCTTTCAGgttatttttc ... ttttttacagCCATGCTTCTACATCCCCCCTTCACTTCGATTCAGATCAACAAACGGATAT
EST: CACAAAGAAGGCCAACAGCGGTGGAGGTTTTGCAGCATCCCTTCTTTCAG CCATGCTTCTACATCCCCCCTTCACTTCGATTCAGATCAACAAACGGATATEST: gi|88688550|gb|CI732126.1|CI732126
genomic: CACAAAGAAGGCCAACAGCGGTGGAGGTTTTGCAGCATCCCTTCTTTCAGgttatttttc ... ttttttacagCCATGCTTCTACATCCCCCCTTCACTTCGATTCAGATCAACAAACGGATAT
EST: CACAAAGAAGGCCAACAGCGGTGGAGGTTTTGCAGCATCCCTTCTTTCAG CCATGCTTCTACATCCCCCCTTCACTTCGATTCAGATCAACAAACGGATAT
genomic: CACAAAGAAGGCCAACAGCGGTGGAGGTTTTGCAGCATCCCTTCTTTCAGgttatttttc ... ttttttacagCCATGCTTCTACATCCCCCCTTCACTTCGATTCAGATCAACAAACGGATAT
ttgcggtagttgtatatttgttattttgaaatatcataattgtttttttttacagCCATGCTTCTACATCCCCCCTTCACTTCGATTCAGATCAACAAACGGATATGCAGCAACACCACCATCAG
ttgtttttttttac CT-rich tract
tatatttgttattttg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttatttttctggttattactttccatagtacatgatgaacttatttatgagtttgcggtagttgtatatttgttattttgaaatatcataattgtttttttttacagCCATGCTTCTACATCCCCCCTTCACTTCGATTCAGATCAACAAACGGATATGCAGCAACACCACCATCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA