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gttagttgaagttctatgtgcatctctcttttctcattgttggcagaagcgcttattgccttctatgttatatcacagGCATTTGTGATTTCATTTTCTCTTGGTTTGGGAGCCATACCATGGATCATAATGTCTGAG
species | Oryza sativa |
transcript | LOC_Os05g50280.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: CTGTAATGAGTATGCTTTCGCTGGTCGGGCTTGTG GCATTTGTGATTTCATTTTCTCTTGGTTTGGGAGCCATACCATGGATCATAEST: gi|89182912|gb|CI045670.1|CI045670
genomic: CTGTAATGAGTATGCTTTCGCTGGTCGGGCTTGTGgttagttgaa ... tatatcacagGCATTTGTGATTTCATTTTCTCTTGGTTTGGGAGCCATACCATGGATCATA
EST: GTTCTCATTTATACTCTGTAATGAGTATGCTTTCGCTGGTCGGGCTTGTG GCATTTGTGATTTCATTTTCTCTTGGTTTGGGAGCCATACCATGGATCATAEST: gi|29678789|gb|CB675064.1|CB675064
genomic: GTTCTCATTTATACTCTGTAATGAGTATGCTTTCGCTGGTCGGGCTTGTGgttagttgaa ... tatatcacagGCATTTGTGATTTCATTTTCTCTTGGTTTGGGAGCCATACCATGGATCATA
EST: GTTCTCATTTATACTCTGTAATGAGTATGCTTTCGCTGGTCGGGCTTGTG GCATTTGTGATTTCATTTTCTCTTGGTTTGGGAGCCATACCATGGATCATAEST: gi|29678790|gb|CB675065.1|CB675065
genomic: GTTCTCATTTATACTCTGTAATGAGTATGCTTTCGCTGGTCGGGCTTGTGgttagttgaa ... tatatcacagGCATTTGTGATTTCATTTTCTCTTGGTTTGGGAGCCATACCATGGATCATA
EST: GTTCTCATTTATACTCTGTAATGAGTATGCTTTCGCTGGTCGGGCTTGTG GCATTTGTGATTTCATTTTCTCTTGGTTTGGGAGCCATACCATGGATCATAEST: gi|7274036|gb|AU083580.1|AU083580
genomic: GTTCTCATTTATACTCTGTAATGAGTATGCTTTCGCTGGTCGGGCTTGTGgttagttgaa ... tatatcacagGCATTTGTGATTTCATTTTCTCTTGGTTTGGGAGCCATACCATGGATCATA
EST: GTTCTCATTTATACTCTGTAATGAGTATGCTTTCGCTGGTCGGGCTTGTG GCATTTGTGATTTCATTTTCTCTTGGTTTGGGAGCCATACCATGGATCATAEST: gi|29674764|gb|CB671039.1|CB671039
genomic: GTTCTCATTTATACTCTGTAATGAGTATGCTTTCGCTGGTCGGGCTTGTGgttagttgaa ... tatatcacagGCATTTGTGATTTCATTTTCTCTTGGTTTGGGAGCCATACCATGGATCATA
EST: GTTCTCATTTATACTCTGTAATGAGTATGCTTTCGCTGGTCGGGCTTGTG GCATTTGTGATTTCATTTTCTCTTGGTTTGGGAGCCATACCATGGATCATAEST: gi|58679421|gb|CK068108.1|CK068108
genomic: GTTCTCATTTATACTCTGTAATGAGTATGCTTTCGCTGGTCGGGCTTGTGgttagttgaa ... tatatcacagGCATTTGTGATTTCATTTTCTCTTGGTTTGGGAGCCATACCATGGATCATA
EST: GTTCTCATTTATACTCTGTAATGAGTATGCTTTCGCTGGTCGGGCTTGTG GCATTTGTGATTTCATTTTCTCTTGGTTTGGGAGCCATACCATGGATCATA
genomic: GTTCTCATTTATACTCTGTAATGAGTATGCTTTCGCTGGTCGGGCTTGTGgttagttgaa ... tatatcacagGCATTTGTGATTTCATTTTCTCTTGGTTTGGGAGCCATACCATGGATCATA
ctctcttttctcattgttggcagaagcgcttattgccttctatgttatatcacagGCATTTGTGATTTCATTTTCTCTTGGTTTGGGAGCCATACCATGGATCATAATGTCTGAG
tatgttatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagttgaagttctatgtgcatctctcttttctcattgttggcagaagcgcttattgccttctatgttatatcacagGCATTTGTGATTTCATTTTCTCTTGGTTTGGGAGCCATACCATGGATCATAATGTCTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA