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gcaagctaccaaatacttttccctagaattgttgtgtcgatattctcccaggagggccttggtctaatttttgctatttgtgctatattgctcagGTAATTGAATTTGTTCAGTTCAAAGAACGCCTGCAACACTCCATGCAGTATCTTTCTGTAAGATCTGATTCCATAATATTGAGTCTGAAGCAGAAGGCTG
species | Oryza sativa |
transcript | LOC_Os05g27870.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: AATCTGCTGATCTTACCTGTCTTGCATATAGACACCG-ACTTACTCAAAG GTAATTGAATTTGTTCAGTTCAAAGAACGCCTGCAACACTCCATGCAGTATEST: gi|25802190|gb|CA758151.1|CA758151
genomic: AATCTGCTGATCTTACCTGTCTTGCATATAGACACCGTACTTACTCAAAGgcaagctacc ... tattgctcagGTAATTGAATTTGTTCAGTTCAAAGAACGCCTGCAACACTCCATGCAGTAT
EST: CCGTACTTACTCAAAG GTAATTGAATTTGTTCAGTTCAAAGAACGCCTGCAACACTCCATGCAGTATEST: gi|29677067|gb|CB673342.1|CB673342
genomic: CCGTACTTACTCAAAGgcaagctacc ... tattgctcagGTAATTGAATTTGTTCAGTTCAAAGAACGCCTGCAACACTCCATGCAGTAT
EST: AATCTGCTGATCTTACCTGTCTTGCATATAGACACCGTACTTACTCAAAG GTAATTGAATTTGTTCAGTTCAAAGAACGCCTGCAACACTCCATGCAGTAT
genomic: AATCTGCTGATCTTACCTGTCTTGCATATAGACACCGTACTTACTCAAAGgcaagctacc ... tattgctcagGTAATTGAATTTGTTCAGTTCAAAGAACGCCTGCAACACTCCATGCAGTAT
tattctcccaggagggccttggtctaatttttgctatttgtgctatattgctcagGTAATTGAATTTGTTCAGTTCAAAGAACGCCTGCAACACTCCATGCAGTATCTTTCTGTAAGATCTGATTCCATAATATTGAGTCTGAAGCAGAAGGCTG
gtctaat putative branch site (score: 13)
taatttttgctattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaagctaccaaatacttttccctagaattgttgtgtcgatattctcccaggagggccttggtctaatttttgctatttgtgctatattgctcagGTAATTGAATTTGTTCAGTTCAAAGAACGCCTGCAACACTCCATGCAGTATCTTTCTGTAAGATCTGATTCCATAATATTGAGTCTGAAGCAGAAGGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC