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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacttgtgacatttagttctaatttggcgagtgaactatatgaaaatcttgctggtaactttaaattttcaattcaaattgtgcacagTACGCTACCTTGGGGAATAAACTGCCTCCAACAAGACACCCCTTGTTTCCGTGGATCTCCAGAAT

Basic information

species Oryza sativa
transcript LOC_Os05g17604.3
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29627199|gb|CB632210.1|CB632210
EST:     GAATTTGGTGGCAAACAACTTCTTACTCGATACCACCAGTGAAAG                         TACGCTACCTTGGGGAATAAACTGCCTCCAACA-GACACCCCTTGTTTCCG
genomic: GAATTTGGTGGCAAACAACTTCTTACTCGATACCACCAGTGAAAGgtacttgtga ... ttgtgcacagTACGCTACCTTGGGGAATAAACTGCCTCCAACAAGACACCCCTTGTTTCCG
EST: gi|29680539|gb|CB676814.1|CB676814
EST:     GAATTTGGTGGCAAACAACTTCTTACTCGATACCACCAGTGAAAG                         TACGCTACCTTGGGGAATAAACTGCCTCCAACAAGACACCCCTTGTTTC
genomic: GAATTTGGTGGCAAACAACTTCTTACTCGATACCACCAGTGAAAGgtacttgtga ... ttgtgcacagTACGCTACCTTGGGGAATAAACTGCCTCCAACAAGACACCCCTTGTTTC
EST: gi|29627859|gb|CB632870.1|CB632870
EST:     GAATTTGGTGGCAAACAACTTCTTACTCGATACCACCAGTGAAAG                         TACGCTACCTTGGGGAATAAACTGCCTCCAACAAGACACCCCTTGTTTCCG
genomic: GAATTTGGTGGCAAACAACTTCTTACTCGATACCACCAGTGAAAGgtacttgtga ... ttgtgcacagTACGCTACCTTGGGGAATAAACTGCCTCCAACAAGACACCCCTTGTTTCCG
EST: gi|29670272|gb|CB666547.1|CB666547
EST:     GAATTTGGTGGCAAACAACTTCTTACTCGATACCACCAGTGAAAG                         TACGCTACCTTGGGGAATAAACTGCCTCCAACAAGACACCCCTTGTTTCCG
genomic: GAATTTGGTGGCAAACAACTTCTTACTCGATACCACCAGTGAAAGgtacttgtga ... ttgtgcacagTACGCTACCTTGGGGAATAAACTGCCTCCAACAAGACACCCCTTGTTTCCG
EST: gi|29628146|gb|CB633157.1|CB633157
EST:     GAATTTGGTGGCAAACAACTTCTTACTCGATACCACCAGTGAAAG                         TACGCTACCTTGGGGAATAAACTGCCTCCAACAAGACACCCCTTGTTTCCG
genomic: GAATTTGGTGGCAAACAACTTCTTACTCGATACCACCAGTGAAAGgtacttgtga ... ttgtgcacagTACGCTACCTTGGGGAATAAACTGCCTCCAACAAGACACCCCTTGTTTCCG
EST: gi|29664573|gb|CB660848.1|CB660848
EST:     GAATTTGGTGGCAAACAACTTCTTACTCGATACCACCAGTGAAAG                         TACGCTACCTTGGGGAATAAACTGCCTCCAACAAGACACCCCTTGTTTCCG
genomic: GAATTTGGTGGCAAACAACTTCTTACTCGATACCACCAGTGAAAGgtacttgtga ... ttgtgcacagTACGCTACCTTGGGGAATAAACTGCCTCCAACAAGACACCCCTTGTTTCCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aactatatgaaaatcttgctggtaactttaaattttcaattcaaattgtgcacagTACGCTACCTTGGGGAATAAACTGCCTCCAACAAGACACCCCTTGTTTCCGTGGATCTCCAGAAT
                   tggtaac  putative branch site (score: 2)
                      taactttaaattttca  TA-rich tract