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...aaagaagtgatatcatacatttccgtttccatcgtgtacaaagaaagtagtccaattattatcactttgctaatgtatacaccatcaatatttgtttcagGTTTTTGGTTTTTTTACCAAGCCTCTCCTCAATCTCCTCATCCCACCAAGGCCTGACATAGCAGCTGATCTCTCAAGCCAGTCAATCATAGACCCACTTC
species | Oryza sativa |
transcript | LOC_Os05g05590.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: ATGCTATCATGATCACCAGCACAGTCATTGTTGTTCTGTTCAGCACAATG GNNNNNNNNNNNNNNACCAAGCCTCTCCTCAATCTCCTCATCCCACCAAGGEST: gi|29677873|gb|CB674148.1|CB674148
genomic: ATGCTATCATGATCACCAGCACAGTCATTGTTGTTCTGTTCAGCACAATGgtaaggatgt ... tttgtttcagGTTTTTGGTTTTTTTACCAAGCCTCTCCTCAATCTCCTCATCCCACCAAGG
EST: ATGCTATCATGATCACCAGCACAGTCATTGTTGTTCTGTTCAGCACAATG GNNNNNNNNNNNNNNACCAAGCCTCTCCTCAATCTCCTCATCCCACCAAGGEST: gi|29675121|gb|CB671396.1|CB671396
genomic: ATGCTATCATGATCACCAGCACAGTCATTGTTGTTCTGTTCAGCACAATGgtaaggatgt ... tttgtttcagGTTTTTGGTTTTTTTACCAAGCCTCTCCTCAATCTCCTCATCCCACCAAGG
EST: ATGCTATCATGATCACCAGCACAGTCATTGTTGTTCTGTTCAGCACAATG GNNNNNNNNNNNNNNACCAAGCCTCTCCTCAATCTCCTCATCCCACCAAGGEST: gi|29672522|gb|CB668797.1|CB668797
genomic: ATGCTATCATGATCACCAGCACAGTCATTGTTGTTCTGTTCAGCACAATGgtaaggatgt ... tttgtttcagGTTTTTGGTTTTTTTACCAAGCCTCTCCTCAATCTCCTCATCCCACCAAGG
EST: ATGCTATCATGATCACCAGCACAGTCATTGTTGTTCTGTTCAGCACAATG GNNNNNNNNNNNNNNACCAAGCCTCTCCTCAATCTCCTCATCCCACCAAGGEST: gi|29672523|gb|CB668798.1|CB668798
genomic: ATGCTATCATGATCACCAGCACAGTCATTGTTGTTCTGTTCAGCACAATGgtaaggatgt ... tttgtttcagGTTTTTGGTTTTTTTACCAAGCCTCTCCTCAATCTCCTCATCCCACCAAGG
EST: ATGCTATCATGATCACCAGCACAGTCATTGTTGTTCTGTTCAGCACAATG GNNNNNNNNNNNNNNACCAAGCCTCTCCTCAATCTCCTCATCCCACCAAGGEST: gi|29628631|gb|CB633642.1|CB633642
genomic: ATGCTATCATGATCACCAGCACAGTCATTGTTGTTCTGTTCAGCACAATGgtaaggatgt ... tttgtttcagGTTTTTGGTTTTTTTACCAAGCCTCTCCTCAATCTCCTCATCCCACCAAGG
EST: ATGCTATCATGATCACCAGCACAGTCATTGTTGTTCTGTTCAGCACAATG GNNNNNNNNNNNNNNACCAAGCCTCTCCTCAATCTCCTCATCCCACCAAGG
genomic: ATGCTATCATGATCACCAGCACAGTCATTGTTGTTCTGTTCAGCACAATGgtaaggatgt ... tttgtttcagGTTTTTGGTTTTTTTACCAAGCCTCTCCTCAATCTCCTCATCCCACCAAGG
agtagtccaattattatcactttgctaatgtatacaccatcaatatttgtttcagGTTTTTGGTTTTTTTACCAAGCCTCTCCTCAATCTCCTCATCCCACCAAGGCCTGACATAGCAGCTGATCTCTCAAGCCAGTCAATCATAGACCCACTTC
tgctaat putative branch site (score: 8)
tttgtttc putative PPT
aattattatcacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaagaagtgatatcatacatttccgtttccatcgtgtacaaagaaagtagtccaattattatcactttgctaatgtatacaccatcaatatttgtttcagGTTTTTGGTTTTTTTACCAAGCCTCTCCTCAATCTCCTCATCCCACCAAGGCCTGACATAGCAGCTGATCTCTCAAGCCAGTCAATCATAGACCCACTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
aaagaagt
- - - - - - -catacat
- - - - - - - - - - - - - - - - - -gtacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caccatc