1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtaagagtctttgaaattttccgcagacatgaacacactagaactgcgagtccccttgtttgtaaccataatgtttgttcgttcagGTGAGGGCGCGGTGCAGGAAGGAATGGGGGATGTTTCAGACGAGAATGGCGGAGGCGGAGAAGGCGTACTACAAGATGATGGGCATCACCCCTCCGAACT
species | Oryza sativa |
transcript | LOC_Os05g01760.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: GGCAAGTCAGAGAATGGAAGACCAGCATGGGAAGGG GTGAGGGCGCGGTGCAGGAAGGAATGGGGGATGTTTCAGACGAGAATGGCGEST: gi|86256753|gb|CI061516.1|CI061516
genomic: GGCAAGTCAGAGAATGGAAGACCAGCATGGGAAGGGgtaagagtct ... gttcgttcagGTGAGGGCGCGGTGCAGGAAGGAATGGGGGATGTTTCAGACGAGAATGGCG
EST: GGCAAGTCAGAGAATGGAAGACCAGCATGGGAAGGG GTGAGGGCGCGGTGCAGGAAGGAATGGGGGATGTTTCAGACGAGAATGGCGEST: gi|89192299|gb|CI049760.1|CI049760
genomic: GGCAAGTCAGAGAATGGAAGACCAGCATGGGAAGGGgtaagagtct ... gttcgttcagGTGAGGGCGCGGTGCAGGAAGGAATGGGGGATGTTTCAGACGAGAATGGCG
EST: GGCAAGTCAGAGAATGGAAGACCAGCATGGGAAGGG GTGAGGGCGCGGTGCAGGAAGGAATGGGGGATGTTTCAGACGAGAATGGCGEST: gi|88906135|gb|CI375207.1|CI375207
genomic: GGCAAGTCAGAGAATGGAAGACCAGCATGGGAAGGGgtaagagtct ... gttcgttcagGTGAGGGCGCGGTGCAGGAAGGAATGGGGGATGTTTCAGACGAGAATGGCG
EST: GGCAAGTCAGAGAATGGAAGACCAGCATGGGAAGGG GTGAGGGCGCGGTGCAGGAAGGAATGGGGGATTTTTCAGACGAGAATGCCGEST: gi|88247670|gb|CI247519.1|CI247519
genomic: GGCAAGTCAGAGAATGGAAGACCAGCATGGGAAGGGgtaagagtct ... gttcgttcagGTGAGGGCGCGGTGCAGGAAGGAATGGGGGATGTTTCAGACGAGAATGGCG
EST: GGCAAGTCAGAGAATGGAAGACCAGCATGGGAAGGG GTGAGGGCGCGGTGCAGGAAGGAATGGGGGATGTTTCAGACGAGAATGGCGEST: gi|86480070|gb|CI122703.1|CI122703
genomic: GGCAAGTCAGAGAATGGAAGACCAGCATGGGAAGGGgtaagagtct ... gttcgttcagGTGAGGGCGCGGTGCAGGAAGGAATGGGGGATGTTTCAGACGAGAATGGCG
EST: GGCAAGTCAGAGAATGGAAGACCAGCATGGGAAGGG GTGAGGGCGCGGTGCAGGAAGGAATGGGGGATGTTTCAGACGAGAATGGCGEST: gi|88967069|gb|CI392031.1|CI392031
genomic: GGCAAGTCAGAGAATGGAAGACCAGCATGGGAAGGGgtaagagtct ... gttcgttcagGTGAGGGCGCGGTGCAGGAAGGAATGGGGGATGTTTCAGACGAGAATGGCG
EST: GGCAAGTCAGAGAATGGAAGACCAGCATGGGAAGGG GTGAGGGCGCGGTGCAGGAAGGAATGGGGGATGTTTCAGACGAGAATGGCGEST: gi|86485542|gb|CI128175.1|CI128175
genomic: GGCAAGTCAGAGAATGGAAGACCAGCATGGGAAGGGgtaagagtct ... gttcgttcagGTGAGGGCGCGGTGCAGGAAGGAATGGGGGATGTTTCAGACGAGAATGGCG
EST: CATGGGAAGGG TTGAGGGCCCGGTGCAGGAAGGAATGGGGGATGTTTCAGACGAGAATGGCGEST: gi|87030821|gb|CI362035.1|CI362035
genomic: CATGGGAAGGGgtaagagtct ... gttcgttcagGTGAGGGCGCGGTGCAGGAAGGAATGGGGGATGTTTCAGACGAGAATGGCG
EST: GGGCAAGTCAGAGAATGGAAGACCAGCATGGGAAGGG GTGAGGGCGCGGTGCAGGAAGGAATGGGGGATGTTTCAGACGAGAATGGCGEST: gi|89191356|gb|CI393209.1|CI393209
genomic: GGGCAAGTCAGAGAATGGAAGACCAGCATGGGAAGGGgtaagagtct ... gttcgttcagGTGAGGGCGCGGTGCAGGAAGGAATGGGGGATGTTTCAGACGAGAATGGCG
EST: GGCAAGTCAGAGAATGGAAGACCAGCATGGGAAGGG GTGAGGGCCCGGTGCAGGAAGGAATGGGGGATGTTTCAGACGAGAATGGCGEST: gi|29674708|gb|CB670983.1|CB670983
genomic: GGCAAGTCAGAGAATGGAAGACCAGCATGGGAAGGGgtaagagtct ... gttcgttcagGTGAGGGCGCGGTGCAGGAAGGAATGGGGGATGTTTCAGACGAGAATGGCG
EST: GGCAAGTCAGAGAATGGAAGACCAGCATGGGAAGGG GTGAGGGCGCGGTGCAGGAAGGAATGGGGGATGTTTCAGACGAGAATGGCGEST: gi|88246448|gb|CI246297.1|CI246297
genomic: GGCAAGTCAGAGAATGGAAGACCAGCATGGGAAGGGgtaagagtct ... gttcgttcagGTGAGGGCGCGGTGCAGGAAGGAATGGGGGATGTTTCAGACGAGAATGGCG
EST: GGCAAGTCAGAGAATGGAAGACCAGCATGGGAAGGG GTGAGGGCGCGGTGCAGGAAGGAATGGGGGATGTTTCAGACGAGAATGGCGEST: gi|86480080|gb|CI122713.1|CI122713
genomic: GGCAAGTCAGAGAATGGAAGACCAGCATGGGAAGGGgtaagagtct ... gttcgttcagGTGAGGGCGCGGTGCAGGAAGGAATGGGGGATGTTTCAGACGAGAATGGCG
EST: GGCAAGTCAGAGAATGGAAGACCAGCATGGGAAGGG GTGAGGGCGCGGTGCAGGAAGGAATGGGGGATGTTTCAGACGAGAATGGCGEST: gi|88227916|gb|CI227396.1|CI227396
genomic: GGCAAGTCAGAGAATGGAAGACCAGCATGGGAAGGGgtaagagtct ... gttcgttcagGTGAGGGCGCGGTGCAGGAAGGAATGGGGGATGTTTCAGACGAGAATGGCG
EST: GCATGGGAAGGG GTGAGGGCGCGGTGCAGGAAGGAATGGGGGATGTTTCAGACGAGAATGGCGEST: gi|86541269|gb|CI181475.1|CI181475
genomic: GCATGGGAAGGGgtaagagtct ... gttcgttcagGTGAGGGCGCGGTGCAGGAAGGAATGGGGGATGTTTCAGACGAGAATGGCG
EST: AGCATGGGAAGGG GTGAGGGCGCGGTGCAGGAAGGAATGGGGGATGTTTCAGACGAGAATGGCGEST: gi|86479999|gb|CI122632.1|CI122632
genomic: AGCATGGGAAGGGgtaagagtct ... gttcgttcagGTGAGGGCGCGGTGCAGGAAGGAATGGGGGATGTTTCAGACGAGAATGGCG
EST: GGCAAGTCAGAGAATGGAAGACCAGCATGGGAAGGG GTGAGGGCGCGGTGCAGGAAGGAATGGGGGATGTTTCAGACGAGAATGGCG
genomic: GGCAAGTCAGAGAATGGAAGACCAGCATGGGAAGGGgtaagagtct ... gttcgttcagGTGAGGGCGCGGTGCAGGAAGGAATGGGGGATGTTTCAGACGAGAATGGCG
aacacactagaactgcgagtccccttgtttgtaaccataatgtttgttcgttcagGTGAGGGCGCGGTGCAGGAAGGAATGGGGGATGTTTCAGACGAGAATGGCGGAGGCGGAGAAGGCGTACTACAAGATGATGGGCATCACCCCTCCGAACT
ttgtaac putative branch site (score: 21)
tttgttc putative PPT
ataatgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagagtctttgaaattttccgcagacatgaacacactagaactgcgagtccccttgtttgtaaccataatgtttgttcgttcagGTGAGGGCGCGGTGCAGGAAGGAATGGGGGATGTTTCAGACGAGAATGGCGGAGGCGGAGAAGGCGTACTACAAGATGATGGGCATCACCCCTCCGAACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG