1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' | 28 5' 3' | 29 5' 3' |
...gttcatataatgctctatgaactggacttgctctttatttatctatatgcaatccatagatgattcttaacttatcgtgcatccttttttgctgatgcagAGCCTAGAGCATCCCAATGGTCGTGAACAATTTGATAAAATCCTCTTAGGTTTATTAAGGAGGGTTTTGGATACTAACAAAAGAGTGCAGGAGGCGGCGT
species | Oryza sativa |
transcript | LOC_Os04g59494.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: GGAGTATTACTTGTTGGACCCTCTCCCGATATAGTAAATTCATTGTACAG AGCCTAGAGCATTCCAATGGTCGTGAACAATTTGATAAAATCCTCEST: gi|58668781|gb|CK057467.1|CK057467
genomic: GGAGTATTACTTGTTGGACCCTCTCCCGATATAGTAAATTCATTGTACAGgtaatatgag ... gctgatgcagAGCCTAGAGCATCCCAATGGTCGTGAACAATTTGATAAAATCCTC
EST: GGAGTATTACTTGTTGGACCCTCTCCCGATATAGTAAATTCATTGTACAG AGCCTAGAGCATCCCAATGGTCGTGAACAATTTGATAAAATCCTCTTAGGTEST: gi|29626307|gb|CB631318.1|CB631318
genomic: GGAGTATTACTTGTTGGACCCTCTCCCGATATAGTAAATTCATTGTACAGgtaatatgag ... gctgatgcagAGCCTAGAGCATCCCAATGGTCGTGAACAATTTGATAAAATCCTCTTAGGT
EST: GGAGTATTACTTGTTGGACCCTCTCCCGATATAGTAAATTCATTGTACAG AGCCTAGAGCATCCCAATGGTCGTGAACAATTTGATAAAATCCTCTTAGGTEST: gi|33797567|gb|CF324643.1|CF324643
genomic: GGAGTATTACTTGTTGGACCCTCTCCCGATATAGTAAATTCATTGTACAGgtaatatgag ... gctgatgcagAGCCTAGAGCATCCCAATGGTCGTGAACAATTTGATAAAATCCTCTTAGGT
EST: GGAGTATTACTTGTTGGACCCTCTCCCGATATAGTAAATTCATTGTACAG AGCCTAGAGCATCCCAATGGTCGTGAACAATTTGATAAAATCCTCEST: gi|58672477|gb|CK061163.1|CK061163
genomic: GGAGTATTACTTGTTGGACCCTCTCCCGATATAGTAAATTCATTGTACAGgtaatatgag ... gctgatgcagAGCCTAGAGCATCCCAATGGTCGTGAACAATTTGATAAAATCCTC
EST: GGAGTATTACTTGTTGGACCCTCTCCCGATATAGTAAATTCATTGTACAG AGCCTAGAGCATCCCAATGGTCGTGAACAATTTGATAAAATCCTCTTAGGTEST: gi|58666235|gb|CK054921.1|CK054921
genomic: GGAGTATTACTTGTTGGACCCTCTCCCGATATAGTAAATTCATTGTACAGgtaatatgag ... gctgatgcagAGCCTAGAGCATCCCAATGGTCGTGAACAATTTGATAAAATCCTCTTAGGT
EST: GGAGTATTACTTGTTGGACCCTCTCCCGATATAGTAAATTCATTGTACAG AGCCTAGAGCATCCCAATGGTCGTGAACAATTTGATAAAATCCTCTTAGGTEST: gi|33678128|gb|CF306367.1|CF306367
genomic: GGAGTATTACTTGTTGGACCCTCTCCCGATATAGTAAATTCATTGTACAGgtaatatgag ... gctgatgcagAGCCTAGAGCATCCCAATGGTCGTGAACAATTTGATAAAATCCTCTTAGGT
EST: GGAGTATTACTTGTTGGACCCTCTCCCGATATAGTAAATTCATTGTACAG AGCCTAGAGCATCCCAATGGTCGTGAACAATTTGATAAAATCCTCTTAGGTEST: gi|58656826|gb|CK045506.1|CK045506
genomic: GGAGTATTACTTGTTGGACCCTCTCCCGATATAGTAAATTCATTGTACAGgtaatatgag ... gctgatgcagAGCCTAGAGCATCCCAATGGTCGTGAACAATTTGATAAAATCCTCTTAGGT
EST: GGAGTATTACTTGTTGGACCCTCTCCCGATATAGTAAATTCATTGTACAG AGCCTAGAGCATCCCAATGGTCGTGAACAATTTGATAAAATCCTCTTAGGTEST: gi|58663523|gb|CK052209.1|CK052209
genomic: GGAGTATTACTTGTTGGACCCTCTCCCGATATAGTAAATTCATTGTACAGgtaatatgag ... gctgatgcagAGCCTAGAGCATCCCAATGGTCGTGAACAATTTGATAAAATCCTCTTAGGT
EST: GGAGTATTACTTGTTGGACCCTCTCCCGATATAGTAAATTCATTGTACAG AGCCTACAGCATCCCAATGGTCGTGAACAATTTGATAAAATCCTCTTAGGTEST: gi|58608786|gb|CK036819.1|CK036819
genomic: GGAGTATTACTTGTTGGACCCTCTCCCGATATAGTAAATTCATTGTACAGgtaatatgag ... gctgatgcagAGCCTAGAGCATCCCAATGGTCGTGAACAATTTGATAAAATCCTCTTAGGT
EST: GGAGTATTACTTGTTGGACCCTCTCCCGATATAGTAAATTCATTGTACAG AGCCTAGAGCATCCCAATGGTCGTGAACAATTTGATAAAATCCTCTTAGGT
genomic: GGAGTATTACTTGTTGGACCCTCTCCCGATATAGTAAATTCATTGTACAGgtaatatgag ... gctgatgcagAGCCTAGAGCATCCCAATGGTCGTGAACAATTTGATAAAATCCTCTTAGGT
tatgcaatccatagatgattcttaacttatcgtgcatccttttttgctgatgcagAGCCTAGAGCATCCCAATGGTCGTGAACAATTTGATAAAATCCTCTTAGGTTTATTAAGGAGGGTTTTGGATACTAACAAAAGAGTGCAGGAGGCGGCGT
catccttttttgct CT-rich tract
ttaacttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcatataatgctctatgaactggacttgctctttatttatctatatgcaatccatagatgattcttaacttatcgtgcatccttttttgctgatgcagAGCCTAGAGCATCCCAATGGTCGTGAACAATTTGATAAAATCCTCTTAGGTTTATTAAGGAGGGTTTTGGATACTAACAAAAGAGTGCAGGAGGCGGCGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG