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gtgagtgtgttcatcacaaatttacaatattcttatttgataatcacattgtcttatctgtttgttttctttatgtttcagGCAATCAATAAAAGCTTGTCAGCTCTTAGCGATGTTATCTTTGCAATTGCGAAAGGAGACGATCATGTGCCCTTCAGGAACTCAAAACTTACATACCTTT
species | Oryza sativa |
transcript | LOC_Os04g53760.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: AACGCCTTGCTAAAAGTGGCTCCACGGGTGATCGTTTGAAGGAAACTCAG GCAATCAATAAAAGCTTGTCAGCTCTTAGCGATGTTATCTTTGCAATTGCGEST: gi|29637660|gb|CB642669.1|CB642669
genomic: AACGCCTTGCTAAAAGTGGCTCCACGGGTGATCGTTTGAAGGAAACTCAGgtgagtgtgt ... tatgtttcagGCAATCAATAAAAGCTTGTCAGCTCTTAGCGATGTTATCTTTGCAATTGCG
EST: AACGCCTTGCTAAAAGTGGCTCCACGGGTGATCGTTTGAAGGAAACTCAG GCAATCAATAAAAGCTTGTCAGCTCTTAGCGAGGTTATCTTTGCAATTGCGEST: gi|89184723|gb|CI007148.1|CI007148
genomic: AACGCCTTGCTAAAAGTGGCTCCACGGGTGATCGTTTGAAGGAAACTCAGgtgagtgtgt ... tatgtttcagGCAATCAATAAAAGCTTGTCAGCTCTTAGCGATGTTATCTTTGCAATTGCG
EST: GGTGATCGTTTGAAGGAAACTCAG GCAATCAATAAAAGCTTGTCAGCTCTTAGCGATGTTATCTTTGCAATTGCGEST: gi|86482430|gb|CI125063.1|CI125063
genomic: GGTGATCGTTTGAAGGAAACTCAGgtgagtgtgt ... tatgtttcagGCAATCAATAAAAGCTTGTCAGCTCTTAGCGATGTTATCTTTGCAATTGCG
EST: CCTTGCTAAAAGTGGCTCCACGGGTGATCGTTTGAAGGAAACTCAG GCAATCAATAAAAGCTTGTCAGCTCTTAGCGATGTTATCTTTGCAATTGCGEST: gi|88985287|gb|CI006941.1|CI006941
genomic: CCTTGCTAAAAGTGGCTCCACGGGTGATCGTTTGAAGGAAACTCAGgtgagtgtgt ... tatgtttcagGCAATCAATAAAAGCTTGTCAGCTCTTAGCGATGTTATCTTTGCAATTGCG
EST: AACGCCTTGCTAAAAGTGGCTCCCCGGGTGATCGTTTGAAGGAAACTCAG GCCATCCATAAAAGCTTGTCAGCTCTTAGCGATGTTATCTTTGCAATTGCGEST: gi|87022822|gb|CI269758.1|CI269758
genomic: AACGCCTTGCTAAAAGTGGCTCCACGGGTGATCGTTTGAAGGAAACTCAGgtgagtgtgt ... tatgtttcagGCAATCAATAAAAGCTTGTCAGCTCTTAGCGATGTTATCTTTGCAATTGCG
EST: AACGCCTTGCTAAAAGTGGCTCCACGGGTGATCGTTTGAAGGAAACTCAG GCAATCAATAAAAGCTTGTCAGCTCTTAGCGATGTTATCTTTGCAGTTGCGEST: gi|88980972|gb|CI021099.1|CI021099
genomic: AACGCCTTGCTAAAAGTGGCTCCACGGGTGATCGTTTGAAGGAAACTCAGgtgagtgtgt ... tatgtttcagGCAATCAATAAAAGCTTGTCAGCTCTTAGCGATGTTATCTTTGCAATTGCG
EST: GGTGATCGTTTGAAGGAAACTCAG GCAATCAATAAAAGCTTGTCAGCTCTTAGCGATGTTATCTTTGCAATTGCGEST: gi|427624|gb|D23757.1|D23757
genomic: GGTGATCGTTTGAAGGAAACTCAGgtgagtgtgt ... tatgtttcagGCAATCAATAAAAGCTTGTCAGCTCTTAGCGATGTTATCTTTGCAATTGCG
EST: GTGATCGTTTGAAGGAAACTCAG GCAATCAATAAAAGCTTGTCAGCTCTTAGCGATGTTATCTTTGCAATTGCGEST: gi|87021429|gb|CI274036.1|CI274036
genomic: GTGATCGTTTGAAGGAAACTCAGgtgagtgtgt ... tatgtttcagGCAATCAATAAAAGCTTGTCAGCTCTTAGCGATGTTATCTTTGCAATTGCG
EST: AACGCCTTGCTAAAAGTGGCTCCACGGGTGATCGTTTGAAGGAAACTCAG GCAATCAATAAAAGCTTGTCAGCTCTTAGCGATGTTATCTTTGCAATTGCGEST: gi|58657773|gb|CK046453.1|CK046453
genomic: AACGCCTTGCTAAAAGTGGCTCCACGGGTGATCGTTTGAAGGAAACTCAGgtgagtgtgt ... tatgtttcagGCAATCAATAAAAGCTTGTCAGCTCTTAGCGATGTTATCTTTGCAATTGCG
EST: CACGGGTGATCGTTTGAAGGAAACTCAG GCAATCAATAAAAGCTTGTCAGCTCTTAGCGATGTTATCTTTGCGATTGCG
genomic: CACGGGTGATCGTTTGAAGGAAACTCAGgtgagtgtgt ... tatgtttcagGCAATCAATAAAAGCTTGTCAGCTCTTAGCGATGTTATCTTTGCAATTGCG
atattcttatttgataatcacattgtcttatctgtttgttttctttatgtttcagGCAATCAATAAAAGCTTGTCAGCTCTTAGCGATGTTATCTTTGCAATTGCGAAAGGAGACGATCATGTGCCCTTCAGGAACTCAAAACTTACATACCTTT
atttgat putative branch site (score: 5)
tcttatctgtttgttt putative PPT
ttatttgataatca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtgtgttcatcacaaatttacaatattcttatttgataatcacattgtcttatctgtttgttttctttatgtttcagGCAATCAATAAAAGCTTGTCAGCTCTTAGCGATGTTATCTTTGCAATTGCGAAAGGAGACGATCATGTGCCCTTCAGGAACTCAAAACTTACATACCTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA