1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
gtaagtttgtgaaatgtgtttataattccttctgtctcaaagctatgtctgctaatttcattgttcacttcctgtagGAAGCAATTTTTCCAGGAGGCAGGTGAAGTTGTTGATATTCGTTTCAGTACCTTTGAAGATGGGAACTTCAGGGGCTTTGGACATGTTGAATTTGCCACA
species | Oryza sativa |
transcript | LOC_Os04g52960.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: AAGACTCTTTTTGTTGGAAATTTACCATACAATGTGGAGCAAGAACAAGT GAAGCAATTTTTCCAGGAGGCAGGTGAAGTTGTTGATATTCGTTTCAGTACEST: gi|58685026|gb|CK073713.1|CK073713
genomic: AAGACTCTTTTTGTTGGAAATTTACCATACAATGTGGAGCAAGAACAAGTgtaagtttgt ... cttcctgtagGAAGCAATTTTTCCAGGAGGCAGGTGAAGTTGTTGATATTCGTTTCAGTAC
EST: AAGACTCTTTTTGTTGGAAATTTACCATACAATGTGGAGCAAGAACAAGT GAAGCAATTTTTCCAGGAGGCAGGTGAAGTTEST: gi|58687043|gb|CK075730.1|CK075730
genomic: AAGACTCTTTTTGTTGGAAATTTACCATACAATGTGGAGCAAGAACAAGTgtaagtttgt ... cttcctgtagGAAGCAATTTTTCCAGGAGGCAGGTGAAGTT
EST: AAGACTCTTTGGGTTGGAAATTTACCATACAATGTGGAGCAAGAACAAGT GAAGCAATTTTTCCAGGAGGCAGGTGAAGTTGTTGATATTCGTTTCAGTACEST: gi|218501791|gb|FG963430.1|FG963430
genomic: AAGACTCTTTTTGTTGGAAATTTACCATACAATGTGGAGCAAGAACAAGTgtaagtttgt ... cttcctgtagGAAGCAATTTTTCCAGGAGGCAGGTGAAGTTGTTGATATTCGTTTCAGTAC
EST: AAGACTCTTTTTGTTGGAAATTTACCATACAATGTGGAGCAAGAACAAGT ----CAATTTTTCCAGGAGGCAGGTGAAGTTGTTGATATTCGTTTCAGTACEST: gi|58687835|gb|CK076522.1|CK076522
genomic: AAGACTCTTTTTGTTGGAAATTTACCATACAATGTGGAGCAAGAACAAGTgtaagtttgt ... cttcctgtagGAAGCAATTTTTCCAGGAGGCAGGTGAAGTTGTTGATATTCGTTTCAGTAC
EST: AAGACTCTTTTTGTTGGAAATTTACCATACAATGTGGAGCAAGAACAAGT GAAGCAATTTTTCCAGGAGGCAGGTGAAGTTGTTGATATTCGTTTCAGTACEST: gi|218499407|gb|FG963731.1|FG963731
genomic: AAGACTCTTTTTGTTGGAAATTTACCATACAATGTGGAGCAAGAACAAGTgtaagtttgt ... cttcctgtagGAAGCAATTTTTCCAGGAGGCAGGTGAAGTTGTTGATATTCGTTTCAGTAC
EST: AAGACTCTTTTTGTTGGAAATTTACCATACAATGTGGAGCAAGAACAAGT GAAGCAATTTTTCCAGGAGGCAGGTGAAGTTGTTGATATTCGTTTCAGTAC
genomic: AAGACTCTTTTTGTTGGAAATTTACCATACAATGTGGAGCAAGAACAAGTgtaagtttgt ... cttcctgtagGAAGCAATTTTTCCAGGAGGCAGGTGAAGTTGTTGATATTCGTTTCAGTAC
taattccttctgtctcaaagctatgtctgctaatttcattgttcacttcctgtagGAAGCAATTTTTCCAGGAGGCAGGTGAAGTTGTTGATATTCGTTTCAGTACCTTTGAAGATGGGAACTTCAGGGGCTTTGGACATGTTGAATTTGCCACA
tgctaat putative branch site (score: 95)
ttcacttcct putative PPT
taatttcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtttgtgaaatgtgtttataattccttctgtctcaaagctatgtctgctaatttcattgttcacttcctgtagGAAGCAATTTTTCCAGGAGGCAGGTGAAGTTGTTGATATTCGTTTCAGTACCTTTGAAGATGGGAACTTCAGGGGCTTTGGACATGTTGAATTTGCCACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG