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gtatgtttcagcaaaccgcacccagtactgcgattttaattaatacaactcgctagtaaaccgtttgtttgttactgttctgcagGATTTGGTTCCACAAGCCTGTGAAAGCTGATGATTGGCTTTTATATGTG
species | Oryza sativa |
transcript | LOC_Os04g47120.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: GACATACTCACTCAGTCTTGATCACTC GATTTGGTTCCACAAGCCTGTGAAAGCTGATGATTGGCTTTTATATGTGEST: gi|86430173|gb|CI082596.1|CI082596
genomic: GACATACTCACTCAGTCTTGATCACTCgtatgtttca ... tgttctgcagGATTTGGTTCCACAAGCCTGTGAAAGCTGATGATTGGCTTTTATATGTG
EST: GAAGACATACTCACTCAGTCTTGATCACTC GATTTGGTTCCACAAGCCTGTGAAAGCTGATGATTGGCTTTTATATGTGEST: gi|87005717|gb|CI316136.1|CI316136
genomic: GAAGACATACTCACTCAGTCTTGATCACTCgtatgtttca ... tgttctgcagGATTTGGTTCCACAAGCCTGTGAAAGCTGATGATTGGCTTTTATATGTG
EST: ACTCACTCAGTCTTGATCACTC GATTTGGTTCCACAAGCCTGTGAAAGCTGATGATTGGCTTTTATATGTGEST: gi|163927283|gb|EG710270.1|EG710270
genomic: ACTCACTCAGTCTTGATCACTCgtatgtttca ... tgttctgcagGATTTGGTTCCACAAGCCTGTGAAAGCTGATGATTGGCTTTTATATGTG
EST: CCTCATAGGGAGAAGGGTCTGAAGACATACTCACTCAGTCTTGATCACTC GATTTGGTTCCACAAGCCTGTGAAAGCTGATGATTGGCTTTTATATGTGEST: gi|89177316|gb|CI250765.1|CI250765
genomic: CCTCATAGGGAGAAGGGTCTGAAGACATACTCACTCAGTCTTGATCACTCgtatgtttca ... tgttctgcagGATTTGGTTCCACAAGCCTGTGAAAGCTGATGATTGGCTTTTATATGTG
EST: CCTCATAGGGAGAGGGGTCTGAAGACATACTCACTCAGTCTTGATCACTC GATTTGGTTCCACAAGCCTGTGAAAGCTGATGATTGGCTTTTATATGTGEST: gi|58609050|gb|CK037083.1|CK037083
genomic: CCTCATAGGGAGAAGGGTCTGAAGACATACTCACTCAGTCTTGATCACTCgtatgtttca ... tgttctgcagGATTTGGTTCCACAAGCCTGTGAAAGCTGATGATTGGCTTTTATATGTG
EST: CCTCATAGGGAGAAGGGTCTGAAGACATACTCACTCAGTCTTGATCACTC GATTTGGTTCCACAAGCCTGTGAAAGCTGATGATTGGCTTTTATATGTGEST: gi|88829709|gb|CI074579.1|CI074579
genomic: CCTCATAGGGAGAAGGGTCTGAAGACATACTCACTCAGTCTTGATCACTCgtatgtttca ... tgttctgcagGATTTGGTTCCACAAGCCTGTGAAAGCTGATGATTGGCTTTTATATGTG
EST: AAGACATACTCACTCAGTCTNGATCACTC GATTTGGTTCCACAAGCCTGTGAAAGCTGATGATTGGCTTTTATATGTGEST: gi|88250752|gb|CI348982.1|CI348982
genomic: AAGACATACTCACTCAGTCTTGATCACTCgtatgtttca ... tgttctgcagGATTTGGTTCCACAAGCCTGTGAAAGCTGATGATTGGCTTTTATATGTG
EST: CCTCATAGGGAGAAGGGTCTGAAGACATACTCACTCAGTCTTGATCACTC GATTTGGTTCCACAAGCCTGTGAAAGCTGATGATTGGCTTTTATATGTGEST: gi|88218896|gb|CI216894.1|CI216894
genomic: CCTCATAGGGAGAAGGGTCTGAAGACATACTCACTCAGTCTTGATCACTCgtatgtttca ... tgttctgcagGATTTGGTTCCACAAGCCTGTGAAAGCTGATGATTGGCTTTTATATGTG
EST: CCTCATAGGGAGAAGGGTCTGAAGACATACTCACTCAGTCTTGATCACTC GATTTGGTTCCACAAGCCTGTGAAAGCTGATGATTGGCTTTTATATGTGEST: gi|87026186|gb|CI278310.1|CI278310
genomic: CCTCATAGGGAGAAGGGTCTGAAGACATACTCACTCAGTCTTGATCACTCgtatgtttca ... tgttctgcagGATTTGGTTCCACAAGCCTGTGAAAGCTGATGATTGGCTTTTATATGTG
EST: CCTCATAGGGAGAAGGGTCTGAAGACATACTCACTCAGTCTTGATCACTC GATTTGGTTCCACAAGCCTGTGAAAGCTGATGATTGGCTTTTATATGTGEST: gi|86429359|gb|CI076040.1|CI076040
genomic: CCTCATAGGGAGAAGGGTCTGAAGACATACTCACTCAGTCTTGATCACTCgtatgtttca ... tgttctgcagGATTTGGTTCCACAAGCCTGTGAAAGCTGATGATTGGCTTTTATATGTG
EST: GAAGACATACTCACTCAGTCTTGATCACTC GATTTGGTTCCACAAGCCTGTGAAAGCTGATGATTGGCTTTTATATGTGEST: gi|86878942|gb|CI315384.1|CI315384
genomic: GAAGACATACTCACTCAGTCTTGATCACTCgtatgtttca ... tgttctgcagGATTTGGTTCCACAAGCCTGTGAAAGCTGATGATTGGCTTTTATATGTG
EST: GAAGACATACTCACTCAGTC-TGATCACTC GATTTGGTTCCACAAGCCTGTGAAAGCTGATGATTGGCTTTTATATGTGEST: gi|29670926|gb|CB667201.1|CB667201
genomic: GAAGACATACTCACTCAGTCTTGATCACTCgtatgtttca ... tgttctgcagGATTTGGTTCCACAAGCCTGTGAAAGCTGATGATTGGCTTTTATATGTG
EST: CCTCATAGGGAGAAGGGTCTGAAGACATACTCACTCAGTCTTGATCACTC GATTTGGTTCCACAAGCCTGTGAAAGCTGATGATTGGCTTTTATATGTGEST: gi|86434548|gb|CI105781.1|CI105781
genomic: CCTCATAGGGAGAAGGGTCTGAAGACATACTCACTCAGTCTTGATCACTCgtatgtttca ... tgttctgcagGATTTGGTTCCACAAGCCTGTGAAAGCTGATGATTGGCTTTTATATGTG
EST: GGTCTGAAGACATACTCACTCAGTCTTGATCACTC GATTTGGTTCCACAAGCCTGTGAAAGCTGATGGTTGGCTTTTATATGTGEST: gi|88843985|gb|CI008566.1|CI008566
genomic: GGTCTGAAGACATACTCACTCAGTCTTGATCACTCgtatgtttca ... tgttctgcagGATTTGGTTCCACAAGCCTGTGAAAGCTGATGATTGGCTTTTATATGTG
EST: CCTCATAGGGAGAAGGGTCTGAAGACATACTCACTCAGTCTTGATCACTC GATTTGGTTCCACAAGCCTGTGAAAGCTGATGATTGGCTTTTATATGTGEST: gi|33681707|gb|CF309946.1|CF309946
genomic: CCTCATAGGGAGAAGGGTCTGAAGACATACTCACTCAGTCTTGATCACTCgtatgtttca ... tgttctgcagGATTTGGTTCCACAAGCCTGTGAAAGCTGATGATTGGCTTTTATATGTG
EST: CCTCATAGG-AGAAGGGTCTGAAGACATACTCACTCAGTCTTGATCACTC GATTTGGTTCCACAAGCCTGTGAAAGCTGATGATTGGCTTTTATATGTGEST: gi|88971423|gb|CI017737.1|CI017737
genomic: CCTCATAGGGAGAAGGGTCTGAAGACATACTCACTCAGTCTTGATCACTCgtatgtttca ... tgttctgcagGATTTGGTTCCACAAGCCTGTGAAAGCTGATGATTGGCTTTTATATGTG
EST: CCTCATAGGGAGAAGGGTCTGAAGACATACTCACTCAGTCTTGATCACTC GATTTGGTTCCACAAGCCTGTGAAAGCTGATGATTGGCTTTTATATGTGEST: gi|86426203|gb|CI071300.1|CI071300
genomic: CCTCATAGGGAGAAGGGTCTGAAGACATACTCACTCAGTCTTGATCACTCgtatgtttca ... tgttctgcagGATTTGGTTCCACAAGCCTGTGAAAGCTGATGATTGGCTTTTATATGTG
EST: CCTCATAGGGAGAAGGGTCTGAAGACATACTCACTCAGTCTTGATCACTC GATTTGGTTCCACAAGCCTGTGAAAGCTGATGATTGGCTTTTATATGTGEST: gi|66920748|gb|CX107596.1|CX107596
genomic: CCTCATAGGGAGAAGGGTCTGAAGACATACTCACTCAGTCTTGATCACTCgtatgtttca ... tgttctgcagGATTTGGTTCCACAAGCCTGTGAAAGCTGATGATTGGCTTTTATATGTG
EST: CCTCATAGGGAGAAGGGTCTGAAGACATACTCACTCAGTCTTGATCACTC GATTTGGTTCCACAAGCCTGTGAAAGCTGATGATTGGCTTTTATATGTGATEST: gi|86490744|gb|CI133377.1|CI133377
genomic: CCTCATAGGGAGAAGGGTCTGAAGACATACTCACTCAGTCTTGATCACTCgtatgtttca ... tgttctgcagGATTTGGTTCCACAAGCCTGTGAAAGCTGATGATTGGCTTTTATATGTGAT
EST: CCTCATAGGGAGAAGGGTCTGAAGACATACTCACTCAGTCTTGATCACTC GATTTGGTTCCACAAGCCTGTGAAAGCTGATGATTGGCTTTAATATGTGEST: gi|88959770|gb|CI002380.1|CI002380
genomic: CCTCATAGGGAGAAGGGTCTGAAGACATACTCACTCAGTCTTGATCACTCgtatgtttca ... tgttctgcagGATTTGGTTCCACAAGCCTGTGAAAGCTGATGATTGGCTTTTATATGTG
EST: CCTCATAGGGAGAAGGGTCTGAAGACATACTCACTCAGTCTTGATCACTC GATTTGGTTCCACAAGCCTGTGAAAGCTGATGATTGGCTTTTATATGTG
genomic: CCTCATAGGGAGAAGGGTCTGAAGACATACTCACTCAGTCTTGATCACTCgtatgtttca ... tgttctgcagGATTTGGTTCCACAAGCCTGTGAAAGCTGATGATTGGCTTTTATATGTG
cgattttaattaatacaactcgctagtaaaccgtttgtttgttactgttctgcagGATTTGGTTCCACAAGCCTGTGAAAGCTGATGATTGGCTTTTATATGTG
aattaat putative branch site (score: 24)
ctgttct putative PPT
ttaattaatacaact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtttcagcaaaccgcacccagtactgcgattttaattaatacaactcgctagtaaaccgtttgtttgttactgttctgcagGATTTGGTTCCACAAGCCTGTGAAAGCTGATGATTGGCTTTTATATGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT