Sequence
atgc intronic sequence ATGC exonic sequencegtaattgagctgtgtattctgttcaatactcttgacactgatgttccttctgtttattcattgcatttttgtaaccgttgagcagGTTGGAATGCTGTTGGAACATACTGTTGGCAATCTTGATCCTTTGTACATTGTTAGTTTGGTTCCTGATGGGCTAGAAATACCAAG
Basic information
species | Oryza sativa |
transcript | LOC_Os04g11880.3 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os04g11880.3 (Oryza sativa), 3'ss of exon 14
lower sequence: GRMZM2G134115_T01 (Zea mays), 3'ss of exon 1
gtaattgagctgtgtattctgttcaatactcttgacactgatgttccttctgtttattcattgcatttttgtaaccgttgagcagGTTGGAATGCTGTTGGAACATACTGTTGGCAATCTTGATCCTTTGTACATTGTTAGTTTGGTTCCTGATGGGCTAGAAATACCAAG--------------
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gtaactgaa--ataaatgatgcttaatcttgcctagactgaggcatcttctgtt---ctagttcaatttctagtctgttgggcagGTAGGGAATCTATTGGAACATACAGTTGGCAATCTTGATCCTCTGTACATTGTCAGTTTGGGTCCTGATGGCTTAGAAATACCTCGGTATGTTCCATCAA
upper sequence: LOC_Os04g11880.3 (Oryza sativa), 3'ss of exon 14
lower sequence: GRMZM2G040247_T01 (Zea mays), 3'ss of exon 16
gtaattgagctgtgtattctgttcaatactcttgacactgatgttccttctgtttattcattgcatttttgtaaccgttgagcagGTTGGAATGCTGTTGGAACATACTGTTGGCAATCTTGATCCTTTGTACATTGTTAGTTTGGTTCCTGATGGGCTAGAAATACCAAG
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gtaactgaa--ataaatgatgtttaatcttgcttagactgaggcatcttctgtttcttagttcaatttctatgtctgttgggcagGTAGGGAATCTATTGGAACATACAGTTGGCAATCTTGATCCTCTGTACATTGTCAGTTTGGTTCCTGATGGCTTAGAAATACCTCGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|58692342|gb|CK081029.1|CK081029EST: ATGAGTTATGGGAGGAATTGATAAGACAGTGCCTCCAAAAACCTGAGATG GTTGGAATGCTGTTGGAACATACTGTTGGCAATCTTGATCCTTTGTACATT
genomic: ATGAGTTATGGGAGGAATTGATAAGACAGTGCCTCCAAAAACCTGAGATGgtaattgagc ... cgttgagcagGTTGGAATGCTGTTGGAACATACTGTTGGCAATCTTGATCCTTTGTACATT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cttgacactgatgttccttctgtttattcattgcatttttgtaaccgttgagcagGTTGGAATGCTGTTGGAACATACTGTTGGCAATCTTGATCCTTTGTACATTGTTAGTTTGGTTCCTGATGGGCTAGAAATACCAAG
ttgtaac putative branch site (score: 2)
tttattcatt TA-rich tract