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...cctaagttcctaacagttgttatctggatacatttatcgattattctactgaagtttgttggagctatcaattgtcttcacaataagcaacaatatgcagGTACATTGAGCCTCTTCCATCAGAATCTGATGGTAAATTTGAGTTTGATAACATGATCATTGGACAAGCAATTCCTTCAAACTTCATACCAGCAATTGAG
species | Oryza sativa |
transcript | LOC_Os03g36780.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: TTACACAAAAAGCAATCTGGTGGTCAAGGTCAATATGGACGAGTTTGCGG GTACATTGAGCCTCTTCCATCAGAAGCTGATGGTAAATTTGAGTTTGATAAEST: gi|88966342|gb|CI119477.1|CI119477
genomic: TTACACAAAAAGCAATCTGGTGGTCAAGGTCAATATGGACGAGTTTGCGGgtgagctctt ... caatatgcagGTACATTGAGCCTCTTCCATCAGAATCTGATGGTAAATTTGAGTTTGATAA
EST: GGTCAAGGTCAATATGGACGAGTTTGCGG GTACATTGAGCCTCTTCCATCAGAATCTGATGGTAAATTTGAGTTTGATAAEST: gi|2796618|gb|AA749912.1|AA749912
genomic: GGTCAAGGTCAATATGGACGAGTTTGCGGgtgagctctt ... caatatgcagGTACATTGAGCCTCTTCCATCAGAATCTGATGGTAAATTTGAGTTTGATAA
EST: AGGTCAATATGGACGAGTTTGCGG GTACATTGAGCCTCTTCCATCAGAATCTGATGGTAAATTTGAGTTTGATAA
genomic: AGGTCAATATGGACGAGTTTGCGGgtgagctctt ... caatatgcagGTACATTGAGCCTCTTCCATCAGAATCTGATGGTAAATTTGAGTTTGATAA
ctactgaagtttgttggagctatcaattgtcttcacaataagcaacaatatgcagGTACATTGAGCCTCTTCCATCAGAATCTGATGGTAAATTTGAGTTTGATAACATGATCATTGGACAAGCAATTCCTTCAAACTTCATACCAGCAATTGAG
tatcaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cctaagttcctaacagttgttatctggatacatttatcgattattctactgaagtttgttggagctatcaattgtcttcacaataagcaacaatatgcagGTACATTGAGCCTCTTCCATCAGAATCTGATGGTAAATTTGAGTTTGATAACATGATCATTGGACAAGCAATTCCTTCAAACTTCATACCAGCAATTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - -gttgtta
- - - - - - - - - - - - - - - - - - - - - - -ctactga
- - - - - - - - - - - - - - - - - - - - - - - - - - - tttgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acaataag