1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
gtgaaaagtcagctgtccataccaacatttcacttgaatctacactcaaattcctctgaaatgactgaattgagaagacaatgagtccttacagtaacagaaaacaattgttgtctgaaactattgcagATCCCAACCATGGCCACAGCAGTCGCTAGTCCGATGGGCTTCTCCGCAGCTTCATGACATCGATGCGTTAGATCAGATGGTAGATCCAGCACTGGAAGGA
species | Oryza sativa |
transcript | LOC_Os03g27990.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: TTTGGAGTCGTCATGCTAGAGCTCCTGACTGGCAGGAAAGCATTTGACAG ATCCCAACCATGGCCACAGCAGTCGCTAGTCCGATGGGCTTCTCCGCAGCTEST: gi|86837393|gb|CI347826.1|CI347826
genomic: TTTGGAGTCGTCATGCTAGAGCTCCTGACTGGCAGGAAAGCATTTGACAGgtgaaaagtc ... actattgcagATCCCAACCATGGCCACAGCAGTCGCTAGTCCGATGGGCTTCTCCGCAGCT
EST: TTTGGAGTCGTCATGCTAGAGCTCCTGACTGGCAGGAAAGCATTTGACAG ATCCCAACCATGGCCACAGCAGTCGCTAGTCCGATGGGCTTCTCCGCAGCTEST: gi|88490457|gb|CI427729.1|CI427729
genomic: TTTGGAGTCGTCATGCTAGAGCTCCTGACTGGCAGGAAAGCATTTGACAGgtgaaaagtc ... actattgcagATCCCAACCATGGCCACAGCAGTCGCTAGTCCGATGGGCTTCTCCGCAGCT
EST: TTTGGAGTCGTCATGGTAGAGCTCCTGACTGGCAGGAAAGCATTTGACAG ATCCCAACCATGGCCACAGCAGTCGCTAGTCCGATGGGCTTCTCCGCAGCTEST: gi|88489729|gb|CI427001.1|CI427001
genomic: TTTGGAGTCGTCATGCTAGAGCTCCTGACTGGCAGGAAAGCATTTGACAGgtgaaaagtc ... actattgcagATCCCAACCATGGCCACAGCAGTCGCTAGTCCGATGGGCTTCTCCGCAGCT
EST: TTTGGAGTCGTCATGCTAGAGCTCCTGACTGGCAGGAAAGCATTTGACAG ATCCCAACCATGGCCACAGCAGTCGCTAGTCCGATGGGCTTCTCCGCAGCTEST: gi|87021832|gb|CI277999.1|CI277999
genomic: TTTGGAGTCGTCATGCTAGAGCTCCTGACTGGCAGGAAAGCATTTGACAGgtgaaaagtc ... actattgcagATCCCAACCATGGCCACAGCAGTCGCTAGTCCGATGGGCTTCTCCGCAGCT
EST: TTTGGAGTCGTCATGCTAGAGCTCCTGACTGGCAGGAAAGCATTTGACAG ATCCCAACCATGGCCACAGCAGTCGCTAGTCCGATGGGCTTCTCCGCAGCTEST: gi|88511979|gb|CI439485.1|CI439485
genomic: TTTGGAGTCGTCATGCTAGAGCTCCTGACTGGCAGGAAAGCATTTGACAGgtgaaaagtc ... actattgcagATCCCAACCATGGCCACAGCAGTCGCTAGTCCGATGGGCTTCTCCGCAGCT
EST: TTTGGAGTCGTCATGCTAGAGCTCCTGACTGGCAGGAAAGCATTTGACAG ATCCCAACCATGGCCACAGCAGTCGCTAGTCCGATGGGCTTCTCCGCAGCT
genomic: TTTGGAGTCGTCATGCTAGAGCTCCTGACTGGCAGGAAAGCATTTGACAGgtgaaaagtc ... actattgcagATCCCAACCATGGCCACAGCAGTCGCTAGTCCGATGGGCTTCTCCGCAGCT
aagacaatgagtccttacagtaacagaaaacaattgttgtctgaaactattgcagATCCCAACCATGGCCACAGCAGTCGCTAGTCCGATGGGCTTCTCCGCAGCTTCATGACATCGATGCGTTAGATCAGATGGTAGATCCAGCACTGGAAGGA
cagtaac putative branch site (score: 11)
aaaacaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaaaagtcagctgtccataccaacatttcacttgaatctacactcaaattcctctgaaatgactgaattgagaagacaatgagtccttacagtaacagaaaacaattgttgtctgaaactattgcagATCCCAACCATGGCCACAGCAGTCGCTAGTCCGATGGGCTTCTCCGCAGCTTCATGACATCGATGCGTTAGATCAGATGGTAGATCCAGCACTGGAAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG