1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
...agaatgttttgttctgaataaaccgaaagcatttgatattttcttgaattcctagctatttctcactcaatacgattatctgatgtttccaaacttgcagCCTGGTGTTGCTGTCAAACATTGCAAGGAGGGAACTGAGAGCTCTGCCTTTTGGTTTGCTCTTGGTGGAAAGCAGAATTACACAAGCAGAAATGCCACAC
species | Oryza sativa |
transcript | LOC_Os03g24220.3 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: GTTCGTATGAACAGCAACAATGGGCTGCAAAAGTTGCTGAATTCTTGAAG CCTGGTGTTGCTGTCAAACATTGCAAGGAGGGAACTGAGAGCTCTGCCTTTEST: gi|88351837|gb|CI624642.1|CI624642
genomic: GTTCGTATGAACAGCAACAATGGGCTGCAAAAGTTGCTGAATTCTTGAAGgtatgaaatg ... aaacttgcagCCTGGTGTTGCTGTCAAACATTGCAAGGAGGGAACTGAGAGCTCTGCCTTT
EST: GTTCGTATGAACAGCAACAATGGGCTGGAAAAGTTGCTGAATTCTTGAAG CCTGGTGTTGCTGTCAAACATTGCAAGGAGGGAACTGAGAGCTCTGCCTTTEST: gi|25798468|gb|CA754429.1|CA754429
genomic: GTTCGTATGAACAGCAACAATGGGCTGCAAAAGTTGCTGAATTCTTGAAGgtatgaaatg ... aaacttgcagCCTGGTGTTGCTGTCAAACATTGCAAGGAGGGAACTGAGAGCTCTGCCTTT
EST: GTTCGTATGAACAGCAACAATGGGCTGCAAAAGTTGCTGAATTCTTGAAG CCTGGTGTTGCTGTCAAACATTGCAAGGAGGGAACTGAGAGCTCTGCCTTTEST: gi|88722817|gb|CI746327.1|CI746327
genomic: GTTCGTATGAACAGCAACAATGGGCTGCAAAAGTTGCTGAATTCTTGAAGgtatgaaatg ... aaacttgcagCCTGGTGTTGCTGTCAAACATTGCAAGGAGGGAACTGAGAGCTCTGCCTTT
EST: GTTCGTATGAACAGCAACAATGGGCTGCAAAAGTTGCTGAATTCTTGAAG CCTGGTGTTGCTGTCAAACATTGCAAGGAGGGAACTGAGAGCTCTGCCTTTEST: gi|12404685|gb|AU166286.1|AU166286
genomic: GTTCGTATGAACAGCAACAATGGGCTGCAAAAGTTGCTGAATTCTTGAAGgtatgaaatg ... aaacttgcagCCTGGTGTTGCTGTCAAACATTGCAAGGAGGGAACTGAGAGCTCTGCCTTT
EST: GTTCGTATGAACAGCAACAATGGGCTGCAAAAGTTGCTGAATTCTTGAAG CCTGGTGTTGCTGTCAAACATTGCAAGGAGGGAACTGAGAGCTCTGCCTTTEST: gi|426363|gb|D22226.1|D22226
genomic: GTTCGTATGAACAGCAACAATGGGCTGCAAAAGTTGCTGAATTCTTGAAGgtatgaaatg ... aaacttgcagCCTGGTGTTGCTGTCAAACATTGCAAGGAGGGAACTGAGAGCTCTGCCTTT
EST: GTTCGTATGAACAGCAACAATGGGCTGCAAAAGTTGCTGAATTCTTGAAG CCTGGTGTTGCTGNCAAACATTGCAAGGAGGGEST: gi|58674368|gb|CK063054.1|CK063054
genomic: GTTCGTATGAACAGCAACAATGGGCTGCAAAAGTTGCTGAATTCTTGAAGgtatgaaatg ... aaacttgcagCCTGGTGTTGCTGTCAAACATTGCAAGGAGGG
EST: GTTCGTATGAACAGCAACAATGGGCTGCAAAAGTTGCTGAATTCTTGAAG CCTGGTGTTGCTGTCAAACATTGCAAGGAGGGAACTGAGAGCTCTGCCTTTEST: gi|58610643|gb|CK038355.1|CK038355
genomic: GTTCGTATGAACAGCAACAATGGGCTGCAAAAGTTGCTGAATTCTTGAAGgtatgaaatg ... aaacttgcagCCTGGTGTTGCTGTCAAACATTGCAAGGAGGGAACTGAGAGCTCTGCCTTT
EST: TGCTGAATTCTTGAAG CCTGGTGTTGCTGTCAAACATTGCGAGGAGGGAACTGAGAGCTCTGGCTTTEST: gi|58672994|gb|CK061680.1|CK061680
genomic: TGCTGAATTCTTGAAGgtatgaaatg ... aaacttgcagCCTGGTGTTGCTGTCAAACATTGCAAGGAGGGAACTGAGAGCTCTGCCTTT
EST: GTTCGTATGAACAGCAACAATGGGCTGCAAAAGTTGCTGAATTCTTGAAG CCTGGTGTTGCTGTCAAACATTGCAAGGAGGGAACTGAGAGCTCTGCCTTTEST: gi|88569524|gb|CI660699.1|CI660699
genomic: GTTCGTATGAACAGCAACAATGGGCTGCAAAAGTTGCTGAATTCTTGAAGgtatgaaatg ... aaacttgcagCCTGGTGTTGCTGTCAAACATTGCAAGGAGGGAACTGAGAGCTCTGCCTTT
EST: GTTCGTATGAACAGCAACAATGGGCTGCAAAAGTTGCTGAATTCTTGAAG CCTGGTGTTGCTGTCAAACATTGCAAGGAGGGAACTGAGAGCTCTGCCTTT
genomic: GTTCGTATGAACAGCAACAATGGGCTGCAAAAGTTGCTGAATTCTTGAAGgtatgaaatg ... aaacttgcagCCTGGTGTTGCTGTCAAACATTGCAAGGAGGGAACTGAGAGCTCTGCCTTT
gaattcctagctatttctcactcaatacgattatctgatgtttccaaacttgcagCCTGGTGTTGCTGTCAAACATTGCAAGGAGGGAACTGAGAGCTCTGCCTTTTGGTTTGCTCTTGGTGGAAAGCAGAATTACACAAGCAGAAATGCCACAC
tatttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agaatgttttgttctgaataaaccgaaagcatttgatattttcttgaattcctagctatttctcactcaatacgattatctgatgtttccaaacttgcagCCTGGTGTTGCTGTCAAACATTGCAAGGAGGGAACTGAGAGCTCTGCCTTTTGGTTTGCTCTTGGTGGAAAGCAGAATTACACAAGCAGAAATGCCACAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA