1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...gttttttttggcatcaaagcgaacaggccctagttttggcacctgggtgatacttgcttttattggaagcttacttgttttgcgagctgtttctgtgcagTGATGTGGTCGAGATGGCAAGTTGTGCTCCACTCTTCATAAATGACAACGATCGCGG
species | Oryza sativa |
transcript | LOC_Os03g20420.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: GTAGCTGCTCTAGCAGAAGCTGCATTTCTCATTGGATTAGAAAGAAACAG TGATGTGGTCGAGATGGCAAGTTGTGCTCCACTCTTCATAAATGACAACGAEST: gi|29645168|gb|CB650175.1|CB650175
genomic: GTAGCTGCTCTAGCAGAAGCTGCATTTCTCATTGGATTAGAAAGAAACAGgtcttttgcc ... ttctgtgcagTGATGTGGTCGAGATGGCAAGTTGTGCTCCACTCTTCATAAATGACAACGA
EST: GTAGCTGCTCTAGCAGAAGCTGCATTTCTCATTGGATTAGAAAGAAACAG TGATGTGGTCGAGATGGCAAGTTGTGCTCCACTCTTCATAAATGACAACGAEST: gi|29676177|gb|CB672452.1|CB672452
genomic: GTAGCTGCTCTAGCAGAAGCTGCATTTCTCATTGGATTAGAAAGAAACAGgtcttttgcc ... ttctgtgcagTGATGTGGTCGAGATGGCAAGTTGTGCTCCACTCTTCATAAATGACAACGA
EST: GTAGCTGCTTTAGCAGAAGCTGCATTTCTCATT-GATTAGAAAGAAACAG TGATGTGGTCGAGATGGCAAGTTGTGCTCCACTCTTCATAAATGACAACGAEST: gi|27554516|gb|CA998416.1|CA998416
genomic: GTAGCTGCTCTAGCAGAAGCTGCATTTCTCATTGGATTAGAAAGAAACAGgtcttttgcc ... ttctgtgcagTGATGTGGTCGAGATGGCAAGTTGTGCTCCACTCTTCATAAATGACAACGA
EST: GTAGCTGCTCTAGCAGAAGCTGCATTTCTCATTGGATTAGAAAGAAACAG TGATGTGGTCGAGATGGCAAGTTGTGCTCCACTCTTCATAAATGACAACGA
genomic: GTAGCTGCTCTAGCAGAAGCTGCATTTCTCATTGGATTAGAAAGAAACAGgtcttttgcc ... ttctgtgcagTGATGTGGTCGAGATGGCAAGTTGTGCTCCACTCTTCATAAATGACAACGA
ggtgatacttgcttttattggaagcttacttgttttgcgagctgtttctgtgcagTGATGTGGTCGAGATGGCAAGTTGTGCTCCACTCTTCATAAATGACAACGATCGCGG
agcttac putative branch site (score: 27)
ctgtttct putative PPT
ttttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttttttttggcatcaaagcgaacaggccctagttttggcacctgggtgatacttgcttttattggaagcttacttgttttgcgagctgtttctgtgcagTGATGTGGTCGAGATGGCAAGTTGTGCTCCACTCTTCATAAATGACAACGATCGCGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - -catcaaa
- - - - - - - - - - - -caggccc
- - - - - - - - - - - - - - - - - - - gcacctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgagctg